Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq785 174 3e-38 seq975 165 2e-35 seq1077 140 6e-28 seq849 84.2 4e-11 seq757 84.2 4e-11 seq199 84.2 4e-11 >seq785 Length=51992 Score = 174 bits (192), Expect = 3e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| ||||| || || || ||||| || || ||||| ||||| || |||||||| ||| Sbjct 89 CGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCA 148 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || || | |||||| ||||| || ||||| | || || || || |||||||||||||| Sbjct 149 TCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTA 208 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || || ||||||||||| || |||||||| |||| || || || |||| || ||| Sbjct 209 TCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATG 268 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| || ||||| |||||||| || ||||||||| || Sbjct 269 GTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATTGTG 307 >seq975 Length=62782 Score = 165 bits (182), Expect = 2e-35 Identities = 165/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| || ||| || || |||||||| ||||| ||||| ||||||||||| || Sbjct 60915 TACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTC 60974 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 | ||| || || ||||| || || | || || || || |||||||||||||||||||| Sbjct 60975 GAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTG 61034 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || || ||||| || |||||||| || | | || || |||| ||||||||||| Sbjct 61035 GATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTT 61094 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||||||||| || ||||| || |||||| || Sbjct 61095 CCCCGTGAGGGTTTTCACGAAGATTTGCATTTTG 61128 >seq1077 Length=15226 Score = 140 bits (154), Expect = 6e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || || || ||||| || || ||||| ||||| || Sbjct 186 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 127 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 |||||||| ||||| || | |||||| ||||| || ||||| | || || || || ||| Sbjct 126 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 67 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || |||||||||||||| || |||||||| |||| || || || Sbjct 66 ATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACG 7 Query 68415 TCCAA 68419 ||||| Sbjct 6 TCCAA 2 >seq849 Length=642021 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 283003 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 283058 >seq757 Length=160929 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 63844 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 63899 >seq199 Length=107043 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 100558 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 100613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921605476708680