Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1077 89.7 4e-13 seq785 89.7 4e-13 >seq1077 Length=15226 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| || ||||| |||| |||||| || ||||||||||||||||||||| | Sbjct 186 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG-A 128 Query 33961 AATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || |||| || | || |||| |||||||||||||| || || ||||||||||| Sbjct 127 AAGTGTCCTGC-CATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATC 74 >seq785 Length=51992 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| ||||| |||| |||||| || ||||||||||||||||||||| | Sbjct 77 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG-A 135 Query 33961 AATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || |||| || | || |||| |||||||||||||| || || ||||||||||| Sbjct 136 AAGTGTCCTGC-CATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATC 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397055291218138