Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_013691.1 Length=74901 Score E Sequences producing significant alignments: (Bits) Value seq490 185 4e-42 >seq490 Length=866 Score = 185 bits (204), Expect = 4e-42 Identities = 311/437 (71%), Gaps = 11/437 (3%) Strand=Plus/Minus Query 37364 ACGCATGACCGTGGGGTAATCCCTGTCAACATGTACGCCATCAACCTGATGCCATCCGGT 37423 || ||||| ||||| | || || || || || || |||||||| |||| || || ||| Sbjct 757 ACACATGATCGTGGTGATATTCCAGTGAATATCTATGCCATCAATCTGAGTCCTTCAGGT 698 Query 37424 GCAGGTAAGGGCTTCTCCACGAACATCATGGAGGAACAGA-TCACTGGTCCT-TTCCGTG 37481 | ||||| || ||||| || |||||||||||| ||||| ||| || ||| ||||| Sbjct 697 ACTGGTAAAGGGTTCTCTACCAACATCATGGAG-AACAGGGTCA-TGCACCTGTTCCGCC 640 Query 37482 AACGCTTCATGGAG--AGCTTTGATGCAGCAG-CTGAAGCCAACCTTCAGAAGCTGGCTT 37538 | || || |||| | | || | | | || | ||||| | ||||||||| Sbjct 639 ATCGGTTTTTGGAAGAAACATTCCCTCTTCTGGCTACACAAAACCTGCCTAAGCTGGCTA 580 Query 37539 TCGAACGGTCCAGCC-GTAAGGACTGCGACG-AGAGCGAAGAACTCCTGCGAGTCCAGAA 37596 | | || | ||| | | ||| || ||| ||| ||||| || | || || |||| Sbjct 579 ACAAGCG-TGCAGTCAGAAAGAACACAGACCCAGAT-GAAGAGCTTGTACGTGTAGAGAA 522 Query 37597 GGAGTTCAACCAATTGGGGCCACTGGTTTACACCTTTGACTCCGGTACGCCGCCCGCTGT 37656 ||||| | ||| | ||||||||||| | || ||||||||| ||||| || | ||||| Sbjct 521 AGAGTTTGATCAACTAGGGCCACTGGTATTCAACTTTGACTCAGGTACTCCTGCTGCTGT 462 Query 37657 GAAGCAGATGCGGCACAAACTGCTGATGGCTAACGCCGGTGCAGTCAACCTGGTGATCGA 37716 ||||||||||| ||||| || ||||||||| | || ||| ||||||| || ||| || Sbjct 461 TAAGCAGATGCGCCACAAGCTCCTGATGGCTGATGCTGGTTCAGTCAATCTTCAGATTGA 402 Query 37717 CGAGATCGGATCGAACCTCACTGGTCAGATCGAAGTGCTGAACACTTTCCTCGAACTCTA 37776 || |||||||| || || ||| | | || ||||| ||||| ||||| |||||||| Sbjct 401 TGAAATCGGATCCAATCTATTGGGTAACTTGGATGTGCTCAACACATTCCTGGAACTCTA 342 Query 37777 CGACGTGGGCGCCATCA 37793 ||||| ||| |||||| Sbjct 341 TGACGTTGGCTCCATCA 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 239554111081158