Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq975 131 2e-25 seq785 107 2e-18 seq509 93.3 4e-14 >seq975 Length=62782 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| ||||| |||||||| ||||||||||| | ||||| ||| | Sbjct 61127 AAAATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCT 61068 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | ||| | || | ||||||| ||||| || || ||||| | || Sbjct 61067 TCGGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGAT 61008 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || |||| ||| || |||||||| || || | | | |||||| || ||| Sbjct 61007 CAGCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTAC 60948 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||| |||||| || || || ||||| Sbjct 60947 AACATCCAGAAGGAAAGCACTCTTCACTTGGT 60916 >seq785 Length=51992 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || ||||| || |||||||| || | || || ||| | | Sbjct 304 AATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATC 245 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||| | || | ||| |||| || || || || ||||| | || || Sbjct 244 AGATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 185 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| || ||||| |||||||| || | | || || || ||||| Sbjct 184 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAA 125 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || ||||| | || || |||||||| ||||||||||| || ||| Sbjct 124 CATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTTTGAGGGGTGGC 76 >seq509 Length=80777 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 || || ||||||||||| ||||| ||||| ||||| || |||| | | ||||| | Sbjct 8236 CTTGCAGCGAAAAAGGCAAGCACATGCTTAATGAAGTGCTGCTCATCCTTGTTCAGACTT 8177 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 |||||||| | |||| || ||||| | ||||||| | |||||||| || ||||| Sbjct 8176 TCCCAGTCTACCAAGTCCCTGTGTAGGTCGATCTCCTCGGCTGTCCAAAAAGAGGCCTCC 8117 Query 133426 GCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGG 133466 || || || |||||| ||||| ||| || || ||||| Sbjct 8116 GCCTTCTTATACATATCCCACACTTCCTTGTACTGAATGGG 8076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500163615576960