Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq601 138 9e-27 seq785 102 7e-16 seq1077 95.1 1e-13 seq847 95.1 1e-13 seq975 91.5 1e-12 >seq601 Length=136440 Score = 138 bits (152), Expect = 9e-27 Identities = 358/540 (66%), Gaps = 23/540 (4%) Strand=Plus/Plus Query 550010 GGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAAT 550069 || |||||||| ||| || ||||| ||| | || | || || || || || || Sbjct 85982 GGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCGAGATCATAGCGAAC 86041 Query 550070 GATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTT 550129 || || ||||||||||| || || || ||||| | ||||| || || || | | || Sbjct 86042 GACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACACAGAGCGACTGGTG 86101 Query 550130 GGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAA 550189 || || || || ||| | || | | | || || || || ||||||| || || Sbjct 86102 GGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCGTTTTTGACGCGAAG 86161 Query 550190 CGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCT 550249 ||| | |||||| | | || |||| | | || ||| | || |||||||| ||||| Sbjct 86162 CGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACATGAAGCACTGGCCG 86221 Query 550250 TTCCAAATTGTTAATGTTTCTGGAA---------AACCTTATATTGAAGCTACTCATGAA 550300 ||| | || || | |||||| | || |||||||| | | || Sbjct 86222 TTC---ACGGTCAAGG---CTGGAAGCGGGGGTAAGCCACTTATTGAAGTGAACTACCAA 86275 Query 550301 GGATCTGTTA--AACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAATGAAAATG 550357 || || || || | |||||| || || ||||||| | ||||| | |||| ||| Sbjct 86276 GG---TGCTACGAAGACTTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGAAGATG 86332 Query 550358 AAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACC 550416 || ||| ||| ||| | || ||||| ||||||||| ||| || || || || ||||| Sbjct 86333 AAGGAAATTGCCGAGT-CGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAGTACC 86391 Query 550417 AGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACT 550476 ||||| || || || || || || || || || || || || || |||||| || || Sbjct 86392 GGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGGGTCT 86451 Query 550477 TAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||||||||| || || || ||||| ||||| || | || ||||| || || || Sbjct 86452 GAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGGACAA 86511 Score = 95.1 bits (104), Expect = 1e-13 Identities = 205/307 (67%), Gaps = 0/307 (0%) Strand=Plus/Plus Query 552283 TACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAG 552342 |||| || || | || |||| || | || || || ||||| || || || | ||||| Sbjct 87117 TACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTTGGAGACTGCTGGAG 87176 Query 552343 GTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTAT 552402 | | ||||| || | ||||| | || || || || || || || || | || | Sbjct 87177 GCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAAGAAGTCCCAGGTCT 87236 Query 552403 TTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAA 552462 | | || || |||| || || | | || |||||| | |||||||||||| | Sbjct 87237 TCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTTTGAAGGAGAACGTG 87296 Query 552463 AATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTC 552522 | || || ||||| || | | || | || | || || || || |||||||| | Sbjct 87297 CCATGACCAAGGATAACAACCTCTTGGGCAAGTTCCACTTGGATGGAATCCCTCCTGCCC 87356 Query 552523 CTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATG 552582 | ||||| || || ||||| ||||| || |||||||| ||||| ||||| || |||| | Sbjct 87357 CCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAAATGGCATCATGAACG 87416 Query 552583 TGACTGC 552589 | ||||| Sbjct 87417 TCACTGC 87423 >seq785 Length=51992 Score = 102 bits (112), Expect = 7e-16 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| | ||| || || | ||||||||| || || ||| |||||||||| || || Sbjct 82 CCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGT 141 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 || ||| || || || || ||||||||||| || | ||||||||||||||||| || Sbjct 142 CCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCC 201 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGA 563431 ||| ||||| || || ||| || || || || ||||| | || ||| || | Sbjct 202 TTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA-TCCA 260 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| || || ||||| || || || || ||||| Sbjct 261 GAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 303 >seq1077 Length=15226 Score = 95.1 bits (104), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | ||||||||| || || ||| |||||||||| || || || Sbjct 177 AGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTG 118 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || || || || ||||||||||| || | ||||||||||||||||| ||||| Sbjct 117 CCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCC 58 Query 563377 TTATCTTGAATTTTT 563391 ||||| ||||| ||| Sbjct 57 TTATCCTGAATCTTT 43 >seq847 Length=123647 Score = 95.1 bits (104), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 550387 AGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGC 550446 |||||| | |||| || | ||||| || |||||||| ||||| ||||||| ||||| Sbjct 25145 AGAAGTAAAAAATGCGGTTGTTACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGC 25204 Query 550447 TACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTAC 550506 || || || || || || || || |||||||| | ||||| ||||||| || || Sbjct 25205 AACAAAGGACGCAGGCGCAATCGCGGGGCTTAATGTAATCCGTATCCTCAATGAGCCCAC 25264 Query 550507 TGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||| ||||| ||||||||||| | || || Sbjct 25265 TGCGGCTGCTATTGCATATGGATTGGACAA 25294 >seq975 Length=62782 Score = 91.5 bits (100), Expect = 1e-12 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| ||||| || ||||| || || |||||||| | || || || ||| || | Sbjct 60918 CAAG-TGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGA 60976 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 | |||||||| || ||||| || | ||||||||||| ||||| ||||| || ||||| | Sbjct 60977 GCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGA 61036 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 |||| ||||| || || ||||| | | | || || || || | ||||| Sbjct 61037 TTTTCGCCTTTACATTTTCGATGGTATCCG-AAGGCTCCACGTCCAGCGTGATGGTTTTC 61095 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || ||||| ||||| |||||||| Sbjct 61096 CCCGTGAGGGTTTTCACGAAGATTTGCAT 61124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029218312654810