Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq559 136 1e-27 >seq559 Length=544 Score = 136 bits (150), Expect = 1e-27 Identities = 195/272 (72%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 877 AACGTCGAATACAAGGCTTTATCCGCAGAAGGAAAGACGACGCACGGCCTTTCCCCCATT 936 || || || |||||||| | |||| || || ||||| |||||||||| ||| | Sbjct 544 AATGTGGAGTACAAGGCCCTGGCCGCCGATGGCAAGACCGCGCACGGCCTGAGCCCTGTG 485 Query 937 CTGGCCATTCTCGATGAAACCGGGCAGGTTAGGGGGCCGCAGGATGATTTTATCGATGCA 996 |||||||| |||||||||| ||| ||||| | || ||||| || || ||||| || Sbjct 484 CTGGCCATCCTCGATGAAATCGGCCAGGTGCGTGGCCCGCAAAGCGACTTCATCGACGCC 425 Query 997 ATAACTACCGCGCAGGGGGCGCATGAAAACCCGCTGCTGATTGTTATCAGTACGCAGGCA 1056 || || ||| || || || |||||||||||||||||||| | ||| ||||| || Sbjct 424 ATCACCACCAGCCAAGGTGCACATGAAAACCCGCTGCTGATCGCCATCTCGACGCAAGCC 365 Query 1057 GCAAACGATGCTGACCTGCTGAGCATCTGGATTGATGATGCGGTCAA--ATCG-AAAGAT 1113 ||| || || ||||| |||||| |||||||| || || ||| | | |||| Sbjct 364 GCATCGGACGCCGACCTCCTGAGCCAGTGGATTGACGACGC---CAAGCGTAGCCAAGAC 308 Query 1114 CCGCACATCGTATGCCACGTTTATGAAGCGCC 1145 |||| |||||| |||||| | || | ||||| Sbjct 307 CCGCGCATCGTGTGCCACTTGTACGCCGCGCC 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127968967622398