Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq559 140 8e-29 >seq559 Length=544 Score = 140 bits (154), Expect = 8e-29 Identities = 196/272 (72%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 17420 GGCGCTTCATAAACGTGGCATACGATGTGCGGATCTTT-CGAT--TTGACCGCATCATCA 17476 ||||| | || | |||||| |||||| |||| |||| | | ||| || || ||| Sbjct 276 GGCGCGGCGTACAAGTGGCACACGATGCGCGGGTCTTGGCTACGCTTG---GCGTCGTCA 332 Query 17477 ATCCAGATGCTCAGCAGGTCAGCATCGTTTGCTGCCTGCGTACTGATAACAATCAGCAGC 17536 ||||| |||||| ||||| || || ||| || ||||| ||| | ||||||||| Sbjct 333 ATCCACTGGCTCAGGAGGTCGGCGTCCGATGCGGCTTGCGTCGAGATGGCGATCAGCAGC 392 Query 17537 GGGTTTTCATGGGCACCCTGCGCGGTAGTTATTGCATCGATAAAATCATCCTGCGGCCCC 17596 ||||||||||| ||||| || ||| || || || ||||| || || ||||| || Sbjct 393 GGGTTTTCATGTGCACCTTGGCTGGTGGTGATGGCGTCGATGAAGTCGCTTTGCGGGCCA 452 Query 17597 CTAACCTGCCCGGTTTCATCGAGAATAGCCAGAATGGGGGAAAGGCCGTGCGTGGTCTTA 17656 | ||||| ||| |||||||||| || ||||| | ||| |||||||||| |||||| Sbjct 453 CGCACCTGGCCGATTTCATCGAGGATGGCCAGCACAGGGCTCAGGCCGTGCGCGGTCTTG 512 Query 17657 CCTTCTGCGGATAAAGCCTTGTATTCAACGTT 17688 || || |||| | |||||||| || || || Sbjct 513 CCATCGGCGGCCAGGGCCTTGTACTCCACATT 544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124714624393372