Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq785 114 8e-20 seq1077 102 5e-16 seq975 91.5 1e-12 >seq785 Length=51992 Score = 114 bits (126), Expect = 8e-20 Identities = 133/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||||| || || ||| ||| || || ||||| || |||||||| ||||| || Sbjct 125 TTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGC 184 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||||||||| |||||||| || || |||||| || ||| ||| || ||||| Sbjct 185 TGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCT 244 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | || || || ||||| ||||| || ||||||||||| || || || || Sbjct 245 GATGGCTCAA-CATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTG 300 >seq1077 Length=15226 Score = 102 bits (112), Expect = 5e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || | |||||| || || || || || ||||||| || || Sbjct 180 CGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTC 121 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 ||| ||| || || ||||| || |||||||| ||||| || |||||||||||||| ||| Sbjct 120 CTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCT 61 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| || ||||||||| || ||| ||| || ||||| Sbjct 60 TCCTTATCCTGAATCTTTGCCTTCACATTTTCGATGGTATC 20 >seq975 Length=62782 Score = 91.5 bits (100), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| || ||||| || | || ||||| | || || || ||| || | Sbjct 60918 CAAG-TGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGA 60976 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 | || |||||||| ||||| ||||| || |||||||| ||||| |||||||||||||| | Sbjct 60977 GCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGA 61036 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 | || || ||| ||| || ||||| | | || || || || ||||| | Sbjct 61037 TTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCC 61096 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || ||||| ||||| Sbjct 61097 CCGTGAGGGTTTTCACGAAGATTTG 61121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268116187462412