Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq601 437 1e-117 seq785 167 3e-36 seq975 165 1e-35 seq847 163 4e-35 seq1077 140 4e-28 >seq601 Length=136440 Score = 437 bits (484), Expect = 1e-117 Identities = 1053/1582 (67%), Gaps = 15/1582 (1%) Strand=Plus/Plus Query 195303 TTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAG 195362 |||| ||||| | || || || ||||| || || ||||||||| | || || | || | Sbjct 85968 TTGGCATCGACCTTGGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCG 86027 Query 195363 AGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATA 195422 |||| || |||| ||||| || ||| | || || || || || || || || || || | Sbjct 86028 AGATCATAGCGAACGACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACA 86087 Query 195423 ATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482 || || || || || || ||||| ||||| ||| || | |||||| || || | Sbjct 86088 CAGAGCGACTGGTGGGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCG 86147 Query 195483 TCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATA 195542 | ||||||||||||||||| ||||| || ||||| || || || || | Sbjct 86148 TTTTTGACGCGAAGCGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACA 86207 Query 195543 TAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602 | ||| ||||| | | || | || | | |||||| | ||| | || Sbjct 86208 TGAAGCACTGGCCGTTCACGGTCAAGGCTGGAAGCGGGGGTAAGCCACTTATTGAAGTGA 86267 Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 | | || |||| | ||| ||| ||| || |||||||| | |||||| || | | Sbjct 86268 ACTACCAAGGTGCTACGAAGACTTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGA 86327 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||||||||| | ||| || || ||| | || ||| || || || || ||| | || | Sbjct 86328 AGATGAAGGAAATTGCCGAGTCGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAG 86387 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 |||| || ||||||| ||||| || || ||||| ||||||||||| | ||||||||| Sbjct 86388 TACCGGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGG 86447 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 |||| ||| |||| | || || || || || || || || || || || |||||||||| Sbjct 86448 GTCTGAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGG 86507 Query 195843 ACAAGAACAAGGACGAAGATAAA--AATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 ||||||| |||| | ||| ||||| | ||||| || | |||||||| || || Sbjct 86508 ACAAGAAG--GGACAGGGTGAAATGAATGTCCTCATCTTCGACATGGGTGGTGGCACATT 86565 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||| || || || | || || | || || || || || |||||||| |||||||| Sbjct 86566 TGATGTTTCCCTGCTTACCATCGAGGACGGCATCTTTGAGGTCAAGGCTACAGCTGGTGA 86625 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-ATGAGT 196019 ||| ||| | ||||| || || ||||| | || | | | | || || | || | Sbjct 86626 TACCCATTTGGGTGGAGAGGACTTCGACAACAGACTCGTG-GACTTCTGCATGCAGGATT 86684 Query 196020 TCCGTCGAAAGAAT--AAGAAAG-ATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTA 196076 || || |||||| ||| ||| || || || || | ||||| | || || Sbjct 86685 TCAAGCGGAAGAATCGAAGCAAGGATCTTAGCGGCAACAGCCGTGCTCTAAGACGCCTGC 86744 Query 196077 GGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGA 196136 | ||| |||||| | || || || || ||||| | | || | | | |||| Sbjct 86745 GCACTCAATGTGAGAGAGCGAAGCGCACCCTCTCGAGCAGCACCCAGGCCACCATCGAGA 86804 Query 196137 TTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAG 196196 | |||||| ||||||| || ||||| | | | || || |||| |||||||| || | Sbjct 86805 TCGATTCGCTGTTTGAAGGCATTGATTATTCCGTATCTCTTTCCCGGGCACGTTTCGAGG 86864 Query 196197 AGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACG 196256 || | | |||| || |||| | | | | || || || | || | |||| Sbjct 86865 AGCTCTGCATGGATTACTTCAGGAGTTCTCTTGTGCCAGTGGAGAAGGTGTTGAAGGACG 86924 Query 196257 CAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTC 196316 | || || ||| | || | || ||||| | || ||||| || |||||||||| Sbjct 86925 CTGCCATCGACAAGCGCAGTGTGCACGAGGTTGTCTTGGTCGGAGGGTCTACCCGTATTC 86984 Query 196317 CGAAGATTCAACAGATGCTTTCTAGC--TTCTTCAATAATAAAGATTTAAACAAAACGAT 196374 | |||||||| ||||| | || || ||||||||| | || || | | || Sbjct 86985 CCAAGATTCAGCAGAT--TATCCAGGAGTTCTTCAATGACAAGGAGCCCTGCCGTTCCAT 87042 Query 196375 CAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGT 196434 |||||||||||| || || || || ||||| || || ||||| || |||||| ||||| Sbjct 87043 CAACCCGGATGAGGCCGTGGCATACGGTGCTGCAGTGCAGGCCGCCATTCTCAAGGGTGT 87102 Query 196435 TGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCT 196494 |||| | | || || ||||||||||| || || || || || | || || || | Sbjct 87103 CAACAACTCTCAGGTACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTT 87162 Query 196495 TGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAA 196554 || || || || || || ||||| || | || || | ||||| || || || || || Sbjct 87163 GGAGACTGCTGGAGGCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAA 87222 Query 196555 GAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATA 196614 |||| || ||||| | || || | || || || ||||| || |||||||| | Sbjct 87223 GAAGTCCCAGGTCTTCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTT 87282 Query 196615 TGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGG 196673 |||||||||||| | || || | ||||||||| | || | || | ||| | ||| | Sbjct 87283 TGAAGGAGAACG-TGCCATGACCAAGGATAACAACCTCTTGGGCAAGTTCCACTTGGATG 87341 Query 196674 GGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAA 196733 | || || |||| ||| | || || || || || | || ||||||||| || |||| Sbjct 87342 GAATCCCTCCTGCCCCCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAA 87401 Query 196734 ATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGA 196793 |||| || | |||||||| || || ||| |||| ||||| | |||| || Sbjct 87402 ATGGCATCATGAACGTCACTGCCACCGAAAAGAACACTGGGAAATCCAACCAGATCACGA 87461 Query 196794 TTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGG 196853 |||| || || ||||| || || || || ||||| || || ||||| ||| || | Sbjct 87462 TTACGAACGATAAGGGCCGCCTGTCACAGAGTGAAATCGACCGCATGGTGGCAGAAGCTG 87521 Query 196854 AAAAGTACAGGGAAGAAGACGA 196875 | ||||||| || || ||||| Sbjct 87522 AGAAGTACAAGGCGGAGGACGA 87543 >seq785 Length=51992 Score = 167 bits (184), Expect = 3e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || || || || || ||||| || || || || |||||| | ||| Sbjct 303 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATCA 244 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || ||||| || ||||||||||||||||| || |||||| Sbjct 243 GATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 184 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || |||||||| || || ||||| || ||||| | || || ||||||||||| Sbjct 183 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAAC 124 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| |||||||| || || || | ||||| Sbjct 123 ATTCAGAAGGAGTCAACCCTTCATTTGGTTCT 92 >seq975 Length=62782 Score = 165 bits (182), Expect = 1e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||||||||| || || ||||| ||||| || || || ||| | || Sbjct 61124 ATGCAAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAGCCTTCG 61065 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || || || ||||| |||||||||||||| || |||||| Sbjct 61064 GATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCTGATCAG 61005 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| |||||||| || ||||| | |||||| | ||||||||| Sbjct 61004 CAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGATTACAAC 60945 Query 172042 GTTCAAAAGGAGTCTACTCTACAC 172065 | || ||||| ||||| ||| Sbjct 60944 ATCCAGAAGGAAAGCACTCTTCAC 60921 >seq847 Length=123647 Score = 163 bits (180), Expect = 4e-35 Identities = 409/612 (67%), Gaps = 17/612 (3%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 ||||| || ||| | || || |||||||| ||||| || || | | | | | || Sbjct 24753 ATTGGCATTGATCTCGGTACCACTTACTCGTGTGTGGGGGTGTACCGCCACGGAAGAGTT 24812 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || ||||| |||||||||||||||||||| | ||||| ||||| | ||| | ||| Sbjct 24813 GATATTATTCCGAATGACCAAGGAAACCGCATTACTCCTAGCTACGTGTCTTTTTCCGAT 24872 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 ||||| | |||| || || || || || | |||| ||||| ||||| Sbjct 24873 GATGAAAGGAAAATTGGGGAAGCTGCCAAGAACGACGCAGCCGATAACCCGTCAAATACC 24932 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGAT 195541 | || |||| |||||| || || || ||| || || |||| ||| ||| Sbjct 24933 ATTTTCGACGTGAAGCGCCTCATGGGGCGCCGTTTCAACGAGCCACAAGTGCAATCCGAC 24992 Query 195542 ATAAAGGACTGGT--CTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATG 195599 || || |||| | ||||||| | || | | || ||||| |||| | Sbjct 24993 ATGAA--ACTGCTGCCTTATGAGATCATTAA---TAAAGATGGAAAGCCCTACATTAGAG 25047 Query 195600 TTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGA 195659 | | |||| || | |||| | ||||||| || || | || | ||||||||| Sbjct 25048 TCAATGTTCAGGGCCAACAGAAGGAGCTTGCTCCAGAGGAGGTGTCTGCCATGGTGTTGG 25107 Query 195660 TTAAGATGAAGGAGACTGCGGA-ATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 ||||||||| | || || | || | |||| | | || ||| |||| ||||| Sbjct 25108 GCAAGATGAAGCAAGTGGCCGAGAACTATT-TGGGAAGAGAAGTAAAAAATGCGGTTGTT 25166 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| ||||| || |||| |||| ||||||| || || ||||||||||| | || || Sbjct 25167 ACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGCAACAAAGGACGCAGGCGCAATC 25226 Query 195779 GCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 ||||| || || ||| | | || ||||||| || || |||||||| ||||| ||||| Sbjct 25227 GCGGGGCTTAA-TGTAATCCGTATCCTCAATGAGCCCACTGCGGCTGCTATTGCATATGG 25285 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 |||||||| |||||| || || | | ||| ||| ||||| ||||||||||| Sbjct 25286 ATTGGACAAG---AAGGAC---GAGAAGACCATTTTGGTCTACGATCTTGGTGGTGGTAC 25339 Query 195898 GTTTGATGTCTC 195909 || |||||||| Sbjct 25340 CTTCGATGTCTC 25351 >seq1077 Length=15226 Score = 140 bits (154), Expect = 4e-28 Identities = 144/187 (77%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 171907 GAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGC 171966 || |||||| | ||||| || ||||| || | || || |||||||| |||||||||||| Sbjct 5 GACGTTGAGCCATCAGATACCATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGC 64 Query 171967 ATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACC 172026 ||||| || |||||||| || || |||||||| || || ||||| || ||||| | || Sbjct 65 ATTCCTCCTGATCAGCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACA 124 Query 172027 CTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGT 172086 || ||||||||||| |||| |||||||| || || || | ||||| | || || || Sbjct 125 CTTTCTGATTACAACATTCAGAAGGAGTCAACCCTTCATTTGGTTCTGCGTCTACGAGGC 184 Query 172087 GGTGCAA 172093 || |||| Sbjct 185 GG-GCAA 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657850320001680