Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq785 100 2e-16 seq1077 82.4 6e-11 >seq785 Length=51992 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || |||||||| ||| | ||||| ||||||||||| | || ||| | Sbjct 304 AATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATC 245 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || || |||||| ||||| |||||| | || ||||| Sbjct 244 AGATACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 185 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || |||| ||| || || ||||||||||| | || ||| | | || ||||| Sbjct 184 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAA 125 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| |||||||| || Sbjct 124 CATTCAGAAGGAGTCAAC 107 >seq1077 Length=15226 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/152 (72%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 107639 AAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAA 107698 ||||||| ||||| |||||| | || ||||||||| | || |||| ||| || || Sbjct 43 AAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAGCAGCGTCTCATTTTTGCCGGCAA 102 Query 107699 ACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCA 107758 ||||||||||| | || ||| | | || ||||||||||| |||||||| || | || Sbjct 103 GCAGCTGGAGGATGGCAGGACACTTTCTGATTACAACATTCAGAAGGAGTCAACCCTTCA 162 Query 107759 CATGGTGTTGAGATTGCGAGG-GGGAAATAAT 107789 |||| || | | ||||| ||| ||| || Sbjct 163 TTTGGTTCTGCGTCTACGAGGCGGGCAATGAT 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398869658734141