Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq975 125 7e-24 seq785 102 8e-17 seq1077 84.2 2e-11 >seq975 Length=62782 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||| |||||| || |||||||| || | ||| || |||||||| Sbjct 60921 GTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTG 60980 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || ||||||| |||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 60981 TTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTT 61040 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | || || || | |||||||| || || |||||||| || || Sbjct 61041 CGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGT 61100 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTGT 134718 | ||||| ||||| ||||||||||||| Sbjct 61101 GAGGGTTTTCACGAAGATTTGCATTTTGT 61129 >seq785 Length=51992 Score = 102 bits (112), Expect = 8e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTG-TGAGAGTCGTCGAGCTG 134569 || || || || ||||| ||||||||||| || || || || | || || ||||| Sbjct 101 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCA-TCCTCCAGCTG 159 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| |||||||| | |||||||||||| || || |||||||| || || || || || Sbjct 160 CTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTT 219 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | || || || | || || || | || || || |||||||||||||| || || Sbjct 220 TGCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCTGT 279 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTG 134717 | ||| || || || || |||||| || Sbjct 280 GAGAGTCTTGACAAAGATCTGCATTGTG 307 >seq1077 Length=15226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| || | || || || || ||||| ||||||||||| || | Sbjct 186 CCGCCTCGTAGACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 127 Query 134547 ACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || || | || || ||||| ||||| |||||||| | |||||||||||| || || Sbjct 126 AGTGTCCTGCCA-TCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGG 68 Query 134606 TATGCCTTCTTTTTCTTGAATTTTT 134630 |||||||| || || ||||| ||| Sbjct 67 AATGCCTTCCTTATCCTGAATCTTT 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505389119621880