Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_027345.1 Length=73008 Score E Sequences producing significant alignments: (Bits) Value seq490 91.5 7e-14 >seq490 Length=866 Score = 91.5 bits (100), Expect = 7e-14 Identities = 231/348 (66%), Gaps = 5/348 (1%) Strand=Plus/Minus Query 37829 ACTCACGAACGCGGCGAGATTCCGGTCAACATGTACGCCCTCAACCTGATGCCTTCGGGT 37888 || || || || || || ||||| || || || || ||| |||| |||| ||||| ||| Sbjct 757 ACACATGATCGTGGTGATATTCCAGTGAATATCTATGCCATCAATCTGAGTCCTTCAGGT 698 Query 37889 GCAGGTAAGGGTTTCTCCACAAAGGTGATGGAGGACCAGATTACCTATGGCTTCCGCCAT 37948 | ||||| || ||||| || || | |||||| || | | | | ||||||||| Sbjct 697 ACTGGTAAAGGGTTCTCTACCAACATCATGGAGAACAGGGTCATGCACCTGTTCCGCCAT 638 Query 37949 CGGTTCATGGAA---ACCTTCGACACCGCAGCCGAGA-AGCACCTCGACGATCTGGCGTT 38004 ||||| ||||| || ||| | | | | | | | | |||| | ||||| Sbjct 637 CGGTTTTTGGAAGAAACATTCC-CTCTTCTGGCTACACAAAACCTGCCTAAGCTGGCTAA 579 Query 38005 CAAGCGTCACATCCGAAAGGGGTCCGAACTGCCCGACGAGCAGGAAGCTGTTCGAAAGGA 38064 ||||||| || ||||| | || | || |||| | | ||| || || Sbjct 578 CAAGCGTGCAGTCAGAAAGAACACAGACCCAGATGAAGAGCTTGTACGTGTAGAGAAAGA 519 Query 38065 GTTCAAGTCTCTCGGCCCACTGCTGTACGACTTCGACTCGGGTACTGGCCCAGCCGTCAA 38124 ||| | || || |||||| | | | |||| ||||| |||||| | || || || Sbjct 518 GTTTGATCAACTAGGGCCACTGGTATTCAACTTTGACTCAGGTACTCCTGCTGCTGTTAA 459 Query 38125 GCAGATGCGCCACAAGCTGCTGATGGCCAATGCTGGTGCAGTCAACCT 38172 |||||||||||||||||| |||||||| |||||||| ||||||| || Sbjct 458 GCAGATGCGCCACAAGCTCCTGATGGCTGATGCTGGTTCAGTCAATCT 411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 233496619533021