Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq601 282 1e-70 seq785 170 6e-37 seq1077 143 8e-29 seq975 131 5e-25 seq847 96.9 1e-14 seq753 89.7 2e-12 seq884 86.0 2e-11 >seq601 Length=136440 Score = 282 bits (312), Expect = 1e-70 Identities = 940/1447 (65%), Gaps = 19/1447 (1%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || ||||| | || || || || ||||| || | ||| ||| | || || | || || Sbjct 85970 GGCATCGACCTTGGCACCACATACTCTTGCGTGGGTGTATGGAAGAACGAAGGCGTCGAG 86029 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || ||||||||||| || || || || || ||||| ||||| || Sbjct 86030 ATCATAGCGAACGACCAGGGTAACAGAACCACCCCTTCCTATGTCGCATTCACCGACACA 86089 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 ||||| || | || || | || ||||| || | || || || |||| || ||| Sbjct 86090 GAGCGACTGGTGGGCGACGCCGCGAAAAACCAGGTGGCGAGGAACCCCGAAAACACCGTT 86149 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 ||||| || ||||| || ||||| | | || |||| | || || || | Sbjct 86150 TTTGACGCGAAGCGTCTCATTGGACGGAAGTTCGATGACCCCGCGGTGCAGTCGGACATG 86209 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504 || || | || || || || | | ||| | ||| ||| ||||||| || | Sbjct 86210 AAGCACTGGCCGTTCACGGTCAAGGCTGGAAGCGGGGGTAAGCCACTTATTGAAGTGAAC 86269 Query 349505 TATAAAGGTGA-ACAAAAACAATTTTTACCCGAAG-AAATTTCATCAATGGTTTTAGTTA 349562 || |||||| || || || |||| | ||| || ||||||| | ||||| | || | Sbjct 86270 TACCAAGGTGCTACGAAGAC--TTTTCATCCGGAGGAAATTTCCGCCATGGTGCTGGTGA 86327 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | |||||||||||||| || | | | || || ||| | || || |||||||| | Sbjct 86328 AGATGAAGGAAATTGCCGAGTCGTTCGTTGGCAAAGAAGTTAAGGAGGCCGTTATTACAG 86387 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 |||| || || || || ||| | ||||| || ||||| || || |||| ||||||| Sbjct 86388 TACCGGCATACTTCAACGATTCTCAGCGCCAGGCCACAAAGGACGCCGGCACTATTGCGG 86447 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || ||||| | || ||||| || || || |||||||| || || ||||| || | Sbjct 86448 GTCTGAACGTTCTTCGTATCATTAACGAGCCTACGGCTGCAGCCATAGCCTATGGTCTGG 86507 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | | | |||| ||| | || || || || | |||||||| || |||| Sbjct 86508 ACAAGAAGGGACAGGGTGAAATGAATGTCCTCATCTTCGACATGGGTGGTGGCACATTTG 86567 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || || | || || || || ||||| || || || || |||||||||| Sbjct 86568 ATGTTTCCCTGCTTACCATCGAGGACGGCATCTTTGAGGTCAAGGCTACAGCTGGTGATA 86627 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG--TTAAAGAATT 349920 | ||| | |||||||| || || || || | |||| | | || || | | || || Sbjct 86628 CCCATTTGGGTGGAGAGGACTTCGACAACAGACTCG--TGGACTTCTGCATGCAGGATTT 86685 Query 349921 TAAGCG--TCAAGCTAA-AATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 ||||| || | || | ||| || | | || | || | | ||||| | Sbjct 86686 CAAGCGGAAGAATCGAAGCAAGGATCTTAGCGGCAACAGCCGTGCTCTAAGACGCCTGCG 86745 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 ||| ||||| | || ||||| || | || | ||||| || | || || || Sbjct 86746 CACTCAATGTGAGAGAGCGAAGCGCACCCTCTCGAGCAGCACCCAGGCCACCATCGAGAT 86805 Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 ||||| || ||| |||| |||| | |||| || | || || || || || || Sbjct 86806 CGATTCGCTGTTTGAAGGCATTGATTATTCCGTATCTCTTTCCCGGGCACGTTTCGAGGA 86865 Query 350098 ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGC 350157 | || |||||| || || | | | || ||||| || || || || || || Sbjct 86866 GCTCTGCATGGATTACTTCAGGAGTTCTCTTGTGCCAGTGGAGAAGGTGTTGAAGGACGC 86925 Query 350158 AAAAATGTCCAAAAATCAGATTG-ATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 || | || ||| || | || || || || || || || ||||| ||||||| Sbjct 86926 TGCCATCGAC-AAGCGCAGTGTGCACGAGGTTGTCTTGGTCGGAGGGTCTACCCGTATTC 86984 Query 350217 CAAAAGTTCAACAGTTACTATC--TGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAAT 350274 | || |||| ||| | |||| ||||| || |||| ||| || || | | || || Sbjct 86985 CCAAGATTCAGCAG--ATTATCCAGGAGTTCTTCAATGACAAGGAGCCCTGCCGTTCCAT 87042 Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334 || || ||||| || || ||||| |||||||| || ||||| | ||| | || Sbjct 87043 CAACCCGGATGAGGCCGTGGCATACGGTGCTGCAGTGCAGGCCGCCATTCTCAAGGGTGT 87102 Query 350335 TAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATT 350394 || | ||| | | | ||||| | || ||||| ||| | ||||| |||||||| || Sbjct 87103 CAACAACTCTCAGGTACAGGATCTTCTGCTGCTAGACGTAGCGCCACTCTCGCTTGGGTT 87162 Query 350395 AGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAA 350454 || ||| |||| | || ||||| | || | || | || | || || || Sbjct 87163 GGAGACTGCTGGAGGCGTCATGACGAAGTTGATCGAGCGCAACACCACCATCCCCACCAA 87222 Query 350455 AAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATT 350514 |||||||| || | || | ||||| || ||||||| || |||||||| || Sbjct 87223 GAAGTCCCAGGTCTTCACCACCTACGCAGACAACCAGCCAGGAGTGTTGATTCAAGTCTT 87282 Query 350515 TGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAG-TG 350573 |||||| |||||||| || || ||||| || ||||| || || | || | || Sbjct 87283 TGAAGGAGAACGTGCCATGACCAAGGATAACAA-CCTCTTGGGCAAGTTCCACTTGGATG 87341 Query 350574 AAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAA 350633 ||| || || || | || || ||||| || |||||| | |||||||||||| ||| Sbjct 87342 GAATCCCTCCTGCCCCCCGTGGCGTCCCTCAAATCGAAGTCACCTTCGATATTGATGCAA 87401 Query 350634 ATGGTAT 350640 |||| || Sbjct 87402 ATGGCAT 87408 >seq785 Length=51992 Score = 170 bits (188), Expect = 6e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| | || | ||||| | |||||| || ||||| || ||||| || ||||| Sbjct 73 CATGCCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATC 132 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||| | ||||| || || || || || ||||| || ||||| ||||||||||| Sbjct 133 AGAAAGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGG 192 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| |||||||| || || || || ||||| || || | ||| ||||| || Sbjct 193 AGGAATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTC 252 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||| || || |||| || || || || || || || ||||| ||||||||| Sbjct 253 AACATCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATT 304 >seq1077 Length=15226 Score = 143 bits (158), Expect = 8e-29 Identities = 132/167 (79%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | |||||| || ||||| || ||||| || |||||||| | ||| | ||||| Sbjct 171 AGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCC 112 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || ||||| || ||||| ||||||||||||||||| ||||| |||||| Sbjct 111 TCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCC 52 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTC 140692 ||||| || || || ||||| || || | ||| ||||| ||||| || Sbjct 51 TGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACGTC 5 >seq975 Length=62782 Score = 131 bits (144), Expect = 5e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| |||||||| || || || || || ||||| || | || | |||||| || | Sbjct 60918 CAAG-TGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGA 60976 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | ||||||||||| || || ||||| ||||||||||| ||||| ||||| || || || | Sbjct 60977 GCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGA 61036 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 |||| || |||||||| || || | ||| || || || || || || || | || || | Sbjct 61037 TTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCC 61096 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || ||||| || || || |||||| Sbjct 61097 CCGTGAGGGTTTTCACGAAGATTTGCATT 61125 >seq847 Length=123647 Score = 96.9 bits (106), Expect = 1e-14 Identities = 178/260 (68%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 349550 ATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGAT 349609 ||||| || | || |||||| || | || || ||||| || | ||||| || Sbjct 25098 ATGGTGTTGGGCAAGATGAAGCAAGTGGCCGAGAACTATTTGGGAAGAGAAGTAAAAAAT 25157 Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| ||||||| || || ||||| |||||||| || || |||||||| || || Sbjct 25158 GCGGTTGTTACTGTTCCTGCATATTTCAATGATGCACAACGCCAAGCAACAAAGGACGCA 25217 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 ||| || |||||| | ||||| | | || | ||||| |||||||| || || ||| Sbjct 25218 GGCGCAATCGCGGGGCTTAATGTAATCCGTATCCTCAATGAGCCCACTGCGGCTGCTATT 25277 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 |||||||| | || || || ||| || || | ||| | | | ||| | ||| Sbjct 25278 GCATATGGATTGGACAA---GAAGGAC---GAGAAGACCATTTTGGTCTACGATCTTGGT 25331 Query 349790 GGTGGTACTTTTGATGTATC 349809 |||||||| || ||||| || Sbjct 25332 GGTGGTACCTTCGATGTCTC 25351 >seq753 Length=109509 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 423766 GCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTCG 423823 ||| ||||| ||||||||||||||| | |||||| ||| |||| ||| || ||| || || Sbjct 11764 GCACGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGCAAGTCCGCG 11705 Query 423824 TGGGTTCAAACCCCACTCCGTGCATT 423849 |||||||||| |||||| |||||||| Sbjct 11704 TGGGTTCAAATCCCACTTCGTGCATT 11679 >seq884 Length=126544 Score = 86.0 bits (94), Expect = 2e-11 Identities = 73/88 (83%), Gaps = 4/88 (5%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGGC---GAAAGCCT 423821 |||| ||||||||||||||| |||||||| |||||||| || |||| ||| || Sbjct 80247 AGCACGGATGCCCGAGTGGT-TAAGGGGGTGGACTTAAGTTCCCCTGGTCGTGAAGACCG 80189 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATT 423849 ||||||||| |||||||||||||||||| Sbjct 80188 CGTGGGTTCGAACCCCACTCCGTGCATT 80161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515225880544607