Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_029017.1 Length=73420 Score E Sequences producing significant alignments: (Bits) Value seq490 199 2e-46 >seq490 Length=866 Score = 199 bits (220), Expect = 2e-46 Identities = 311/436 (71%), Gaps = 9/436 (2%) Strand=Plus/Minus Query 65293 ACGCATGATCGTGGGGTAATCCCTGTCAACATGTACGCCATCAACCTGATGCCTTCGGGC 65352 || ||||||||||| | || || || || || || |||||||| |||| ||||| || Sbjct 757 ACACATGATCGTGGTGATATTCCAGTGAATATCTATGCCATCAATCTGAGTCCTTCAGGT 698 Query 65353 GCGGGTAAAGGCTTTTCCACGAACATCATGGAGGAACAGA-TCACTGGTCCT-TTCCGTG 65410 | |||||||| || || || |||||||||||| ||||| ||| || ||| ||||| Sbjct 697 ACTGGTAAAGGGTTCTCTACCAACATCATGGAG-AACAGGGTCA-TGCACCTGTTCCGCC 640 Query 65411 AGCGCTTCATGGAA---AGCTTCGATGCGGCGGCTGAAGTCAACCTTCAGAAGCTGGCTT 65467 | || || ||||| | ||| | |||| | ||||| | ||||||||| Sbjct 639 ATCGGTTTTTGGAAGAAACATTCCCTCTTCTGGCTACACAAAACCTGCCTAAGCTGGCTA 580 Query 65468 TCGAACGGTCCAGTC-GTAAGGACTGTGACGAAAGCGAAGAACTCCTGCGAGTCCAGAAG 65526 | | || | ||||| | ||| || ||| | ||||| || | || || |||| Sbjct 579 ACAAGCG-TGCAGTCAGAAAGAACACAGACCCAGATGAAGAGCTTGTACGTGTAGAGAAA 521 Query 65527 GAGTTCAACCAACTGGGGCCACTGGTTTATACCTTTGACTCCGGTACGCCGCCTGCTGTG 65586 ||||| | ||||| ||||||||||| | | ||||||||| ||||| || ||||||| Sbjct 520 GAGTTTGATCAACTAGGGCCACTGGTATTCAACTTTGACTCAGGTACTCCTGCTGCTGTT 461 Query 65587 AAGCAGATGCGGCACAAACTGCTCATGGCAAATGCCGGTGCAGTGAACCTGGTGATCGAC 65646 ||||||||||| ||||| || || ||||| |||| ||| |||| || || ||| || Sbjct 460 AAGCAGATGCGCCACAAGCTCCTGATGGCTGATGCTGGTTCAGTCAATCTTCAGATTGAT 401 Query 65647 GAAATCGGCTCGAACCTCACGGGTCAGATCGAAGTGTTGAACACCTTCCTCGAACTCTAC 65706 |||||||| || || || |||| | | || ||| | ||||| ||||| |||||||| Sbjct 400 GAAATCGGATCCAATCTATTGGGTAACTTGGATGTGCTCAACACATTCCTGGAACTCTAT 341 Query 65707 GACGTGGGCGCCATCA 65722 ||||| ||| |||||| Sbjct 340 GACGTTGGCTCCATCA 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234814995929129