Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq785 179 9e-40 seq975 143 6e-29 seq1077 132 1e-25 >seq785 Length=51992 Score = 179 bits (198), Expect = 9e-40 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| || || ||||| ||||| | ||| ||||| ||||| ||||||||| Sbjct 101 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGC 160 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || || || || || |||||||||| |||||||| |||||||||||| Sbjct 161 TTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTT 220 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| ||||||||||| || || ||||| || ||||| || || || || ||| Sbjct 221 GCCTTCACATTTTCGATGGTATCTGATGGCTCAACATCCAGAGTAATGGTTTTCCCTGTG 280 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 |||||||| ||||| | ||||||| Sbjct 281 AGAGTCTTGACAAAGATCTGCATT 304 >seq975 Length=62782 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||||||| || || |||||||| ||||||| |||||||| ||||| || ||||| Sbjct 60921 GTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCTCGAGCTG 60980 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||| || || || || || ||||| |||| ||||||||||| ||||| || Sbjct 60981 TTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGGATTTT 61040 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||||||||| || || || || || || ||||| || || ||||| Sbjct 61041 CGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTTTCCCCGT 61100 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || || || | |||||||| Sbjct 61101 GAGGGTTTTCACGAAGATTTGCATTTT 61127 >seq1077 Length=15226 Score = 132 bits (146), Expect = 1e-25 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| || || ||||| ||||| | ||| ||||| ||||| ||||||||| Sbjct 162 TGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAAAGTGTCCTGCCATCCTCCAGCTGC 103 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || || || || || |||||||||| |||||||| ||||| |||||| Sbjct 102 TTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTT 43 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGA 211057 ||||| ||||||||||| || || Sbjct 42 GCCTTCACATTTTCGATGGTATCTGA 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159130182948185