Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq380 141 6e-29 >seq380 Length=820 Score = 141 bits (156), Expect = 6e-29 Identities = 259/374 (69%), Gaps = 4/374 (1%) Strand=Plus/Plus Query 59501 TTGACCAGCTCGGCCAAGGCCGCCGAATAGGTTTCGTCGCGGATGTGCCAGGCTTGCAGC 59560 || |||| |||||||| |||| ||||| ||||| || ||||| ||||| || || ||| Sbjct 17 TTCACCAATTCGGCCAATGCCGTTGAATAAGTTTCATCACGGATATGCCAAGCCTGTAGC 76 Query 59561 CAGGACAGCTTGGCGTAGGTCAGGCCGGGGCTCGACTCGGCCATCTTGGTCAGCCCGAGG 59620 || || || ||||| || || || || | || |||||||| || |||||||| | Sbjct 77 CATGAGAGTTTGGCATAAGTTGTACCAGGACATGATTCGGCCATTTTCGTCAGCCCTAAA 136 Query 59621 TTGATCGCATCACCGAGGATTGCGGACAGCAGCAACGTCCTGTCTTTGGCCTCGGCC-CC 59679 || || |||||| | || || | | |||| |||| | || || || | | || Sbjct 137 TTAATTGCATCAGCCAGTATGGTCGTGAGCAATAACGCTTTATCCTTCGCAGTGTCATCC 196 Query 59680 GTCCTTCAAGTGGGTGAAGTGGCGGCTGAAGCCCGTCCAGTCGTCCACGTCCATCAGCAG 59739 || ||||| || |||||||| || | ||||| ||||| || || || ||||| | | Sbjct 197 GTT-TTCAAATGAGTGAAGTGTCGAGTAAAGCCTGTCCATTCATCGACCTCCATTAATAA 255 Query 59740 TTCGGTGATCTTGATGCGCGGCAGTAAC-TGGCTGGTTTGGTCGATCAGCGCCTGCGCCC 59798 ||||||||||||||| | || | | | | ||| |||||||| || | | || || Sbjct 256 TTCGGTGATCTTGATATGTGGTAACAGCATTGCT-GTTTGGTCAATTAAAGTTTGGGCTG 314 Query 59799 GATCCGGCACCGCCGCATCCAGCGGGGTGATTTTCAGCCCTGACTCGGTGAGGATGGCAT 59858 ||| || || | ||||| || || || ||||| || || || | ||| || |||| Sbjct 315 TATCAGGAGCCACGGCATCGAGAGGTGTTATTTTTAGACCAGATTGATTGATCATCGCAT 374 Query 59859 CGGGCAGCTCGTTG 59872 | |||| |||||| Sbjct 375 CAGGCAAATCGTTG 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330893275766854