Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq975 147 5e-30 seq785 127 4e-24 seq509 86.0 1e-11 >seq975 Length=62782 Score = 147 bits (162), Expect = 5e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 282889 GTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCT 282948 |||||| || | |||||||| || ||||||||||| || | || || | ||||||| Sbjct 60914 GTACCAAGTGAAGAGTGCTTTCCTTCTGGATGTTGTAATCCGAGAGGGTCCTCCCATCCT 60973 Query 282949 CTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTT 283008 | || ||||| || || || |||| ||| || || ||| |||||| || |||||||||| Sbjct 60974 CGAGCTGTTTTCCAGCGAAAATCAGACGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTT 61033 Query 283009 GGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCT 283068 |||| || || ||||| | ||||| || ||||||| || || || || ||||| || | Sbjct 61034 GGATTTTCGCCTTTACATTTTCGATGGTATCCGAAGGCTCCACGTCCAGCGTGATGGTTT 61093 Query 283069 TACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | ||||| | || || ||||| || |||||||| Sbjct 61094 TCCCCGTGAGGGTTTTCACGAAGATTTGCATTTT 61127 >seq785 Length=51992 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || || || |||| ||| | || || || || |||||||| |||| | Sbjct 77 CCACCCCTCAAACGCAGAACCAAATGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGAA 136 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||||||| || || || |||||||| || | ||| || || ||| ||| Sbjct 137 AGTGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGATCAGGAGGA 196 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| || ||||||||||| || || | ||||| || || || | || || Sbjct 197 ATGCCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCAACA 256 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || || || || | |||||| || || ||||||||| Sbjct 257 TCCAGAGTAATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATT 304 >seq509 Length=80777 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 230244 CTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAG 230303 ||||||| ||||| ||||||||||| || ||||| | || || || | || Sbjct 9981 CTCATGGCACAATACATCGAATTCGTTGCGGATCGGCTCCTCACATGTCTTGGCTCTGAC 10040 Query 230304 AAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAA 230363 || | | ||| | | ||| ||||| | |||||||| || || || ||||| || ||| Sbjct 10041 AAGATTTTCAACGCTAGGAATCCCTTTGACTTTATGGACCTGATCTCTCTCCAAGGTAAA 10100 Query 230364 ACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 || ||||||||||| ||||| ||| | || || |||| | |||| || Sbjct 10101 ACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAAAAGGCCGGCGT 10147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046719498732726