Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1380 277 2e-69 seq37 251 7e-62 seq476 241 1e-58 seq320 145 8e-30 seq577 134 1e-26 seq1192 120 3e-22 >seq1380 Length=4123 Score = 277 bits (306), Expect = 2e-69 Identities = 221/265 (83%), Gaps = 1/265 (0%) Strand=Plus/Plus Query 8352 TGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGG 8411 || |||||| |||||||||||||||| ||||| |||||| ||||||||| ||||||| Sbjct 3649 TGGTGCCCACGCTGGAGTGCAGTGGCACCATCTCGGCTCACCGCAACCTCCACCTCCCGC 3708 Query 8412 GTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACC 8471 |||||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||| Sbjct 3709 GTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGGAGGAGCCACC 3768 Query 8472 ACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTG 8531 || || ||| | ||||||||| |||||||||| | |||| |||||| || ||||||| Sbjct 3769 ACACCCGGCTGA-TTTTGTATTGTTAGTAGAGACGGCATTTCTCCATGTGGGTCAGGCTG 3827 Query 8532 GTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTA 8591 |||||||||| |||| || |||| || ||| |||||||||||||||||||| | | Sbjct 3828 GTCTCGAACTGGCGACCCCAGTGGATCTGCCCGCCCCGGCCTCCCAAAGTGCTGGGGTGA 3887 Query 8592 CAGGCATGAGCCACCGCGCCTGGCC 8616 ||||| ||||||| || | |||||| Sbjct 3888 CAGGCGTGAGCCATCGTGACTGGCC 3912 Score = 183 bits (202), Expect = 3e-41 Identities = 148/178 (83%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 8439 CCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAG 8498 || |||||||||||| |||||| ||||||||||| ||||||| ||| || ||||| Sbjct 1 CCCGAGTAGCTGGGACTACAGGTGCCCGCCACCACGCCCAGCTAATCTTTATACTTTTAA 60 Query 8499 TAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATC 8558 |||||| |||||||||| ||| |||| || ||||||||| ||| ||||||| |||| | Sbjct 61 TAGAGACGGGGTTTCACCGTGTCGGCCCGGATGGTCTCGATCTCTTGACCTC--GTGACC 118 Query 8559 CACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 | || |||||||||||||||||||||||||| |||||| |||||||| | ||| |||| Sbjct 119 CGCCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAGGCGTGAGCCACTGAGCCCGGCC 176 Score = 114 bits (126), Expect = 1e-20 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| ||||| ||||||||||||||||||| ||| ||||||| ||||||||||| ||||| Sbjct 4041 TCTCGCTCTGCTGCCCAGGCTGGAGTGCAGCGGCGTGATCTCGGCTCACTGCAAGCTCCG 4100 Query 8404 CCTCCCGGGTTCAAGCTATTCTC 8426 ||||||||||||| || |||||| Sbjct 4101 CCTCCCGGGTTCACGCCATTCTC 4123 >seq37 Length=5704 Score = 251 bits (278), Expect = 7e-62 Identities = 232/291 (80%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 ||||||| || ||| || ||| ||||| ||||| ||||| |||||| |||||||| || Sbjct 2330 TCACTCTCGTGGCCTAGACTGCAGTGCGGTGGCGCGATCTTGGCTCACCGCAACCTCTGC 2389 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 ||||||| ||||||| |||||||||| || |||||| ||||||| |||||| | |||| Sbjct 2390 CTCCCGGTTTCAAGCGATTCTCCTGCATCGGCCTCCTGAGTAGCCGGGATTGCGGGCATG 2449 Query 8465 AGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGC 8524 || ||||| | ||| |||| ||||||||||| |||| ||| ||| |||||| | Sbjct 2450 CGCTGCCACGTCTGGCTGATTTC-GTATTTTTAGTGGAGACGGGGCTTCTCCATGTCGAT 2508 Query 8525 CAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCT 8584 | ||||||| ||||||||| ||||||| ||||||| || || |||||||| ||||||| Sbjct 2509 CGGGCTGGTTTCGAACTCCCGACCTCAGGTGATCCGCCCTCCCCGGCCTCCGGAAGTGCT 2568 Query 8585 GGGATTACAGGCATGAGCCACCGCGCCTGGCC----CTTTAAAAAGTTTTC 8631 ||||| |||||| |||||||||||||| |||| ||| ||| |||||| Sbjct 2569 GGGATGACAGGCGTGAGCCACCGCGCCCGGCCTTCATTTTTAAATGTTTTC 2619 Score = 201 bits (222), Expect = 1e-46 Identities = 203/265 (77%), Gaps = 13/265 (5%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| ||||||||| |||| ||||| |||| |||||||| |||||| | Sbjct 3782 TCTCGCTCTGTCACCCAGGCTGCGGTGCGGTGGCGCTCTCTCGGCTCACTGAAACCTCTG 3841 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 | |||||||||| || ||||| || | |||||||||||||||||| Sbjct 3842 CTTCCCGGGTTCCAGTGATTCTTCTTCG------------GTAGCTGGGATTACAGGCGC 3889 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 | ||| ||| | ||| || || |||||| |||||||| ||||||| ||| ||||| Sbjct 3890 ACACCATGACGGCCGGCTCATATTCCTATTTTCAGTAGAGACGGGGTTTCTCCACGTTGG 3949 Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583 ||| |||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||| Sbjct 3950 CCACGCTGGTCTCGAACTCCTGACCTCAAATGATCCGCCTTCCTGGGCCTCCCAAAGTGC 4009 Query 8584 TGG-GATTACAGGCATGAGCCACCG 8607 ||| | |||||| |||||| ||| Sbjct 4010 TGGAAACGACAGGCCTGAGCCGCCG 4034 Score = 197 bits (218), Expect = 1e-45 Identities = 171/210 (81%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||||| |||||||||| |||||||||| ||||| | |||||||| |||||| Sbjct 4539 TCTCACTCTGTCGCCCAGGCTGTAGTGCAGTGGTGCGATCTTGGGTCACTGCAGCCTCCG 4480 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAG--GC 8461 ||| || ||||||||| ||||| | || |||||||| ||||||||||| |||||| || Sbjct 4479 CCTGCCAGGTTCAAGCAATTCTTCCACCCCAGCCTCCCGAGTAGCTGGGGTTACAGGTGC 4420 Query 8462 AAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGA-GAGGGTTTCACCATGT 8520 |||| |||| || ||| ||||||| |||||||| | ||||||||||| || Sbjct 4419 CTGCCCCACGGCGCCTGACTCCATTTCGTATTTTCAGTAGAGACGGGGGTTTCACCACGT 4360 Query 8521 TGGCCAGGCTGGTCTCGAACTCCTGACCTC 8550 ||||| |||||||||||||||||||||||| Sbjct 4359 TGGCCGGGCTGGTCTCGAACTCCTGACCTC 4330 Score = 183 bits (202), Expect = 3e-41 Identities = 205/274 (75%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| ||| || |||||| | | || ||| |||||| ||||| |||||||| | Sbjct 1647 TCTCGCTCCGTCATCCAGGCCGCATCGCCACGGCACGATCTCAGCTCATCGCAACCTCGG 1588 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 |||||| |||| | | | || || ||| ||| |||| ||| | | |||| || || Sbjct 1587 CCTCCCCGGTTGGAACAAGTCGCCCGCCCCAGTCTCCCGAGCGGTCGTGATTCCAAGCCC 1528 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 | ||||||| ||| |||||| || ||||||| ||||| ||||||| ||| || || Sbjct 1527 ACGCCACCAGGCCCGGCTAATCGTTCTATTTTTCAGAGAGACGGGGTTTCGCCACGTCGG 1468 Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583 |||| ||||||||||||||| | || || | |||||||| |||||||||||||||||||| Sbjct 1467 CCAGCCTGGTCTCGAACTCCCGGCCCCAAGCGATCCACCCGCCTCGGCCTCCCAAAGTGC 1408 Query 8584 TGGGATTACAGGCATGAGCCACCGCGCCTGGCCC 8617 || | |||||| ||||| | || ||| ||||| Sbjct 1407 CGGAGTGACAGGCGTGAGCTAGCGTGCCCGGCCC 1374 >seq476 Length=295 Score = 241 bits (266), Expect = 1e-58 Identities = 218/271 (80%), Gaps = 5/271 (2%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| | |||||||| ||||||||| ||||| | || ||| ||| || | Sbjct 15 TCTCGCTCTGTCACACAGGCTGGGGTGCAGTGGTGCAATCTCAG-TCTCTGTAACGTCTG 73 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||| ||||| || | |||||| ||||||||||| | || || ||||||||| ||||| Sbjct 74 CCTTATGGGTTTAATCAATTCTC-TGCCTCAGCCTTCCGAATACCTGGGATTAGAGGCAC 132 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTT---AGTAGAGAGAGGGTTTCACCATGT 8520 ||||||| || ||||||||||| | ||||| ||| |||| ||||||||| |||| Sbjct 133 CCCCCACCACACCCAGCTAATTTTTTTTTTTTTTTTAGTGGAGACTGGGTTTCACTATGT 192 Query 8521 TGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAG 8580 ||||||||||||||| ||||||||||||| | |||||| ||| ||||||||||| |||| Sbjct 193 TGGCCAGGCTGGTCTTGAACTCCTGACCTTAGGTGATCTACCCACCTCGGCCTCCAAAAG 252 Query 8581 TGCTGGGATTACAGGCATGAGCCACCGCGCC 8611 |||| |||||||||||||||||| | | ||| Sbjct 253 TGCTAGGATTACAGGCATGAGCCTCTGTGCC 283 >seq320 Length=1463 Score = 145 bits (160), Expect = 8e-30 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| | |||| |||||||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 880 TCTCGCCCTGTCGCCCAGGCTGGAGTGCAGTGGCGCCATCTCGGCTCACTGCAAGCTCCG 821 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGC 8461 ||||||||||||| || |||| || |||||||||||| ||||||||||| ||||||| Sbjct 820 CCTCCCGGGTTCACGCCATTCCCCGGCCTCAGCCTCCCGAGTAGCTGGGCCTACAGGC 763 >seq577 Length=739 Score = 134 bits (148), Expect = 1e-26 Identities = 121/149 (81%), Gaps = 5/149 (3%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTG--ATCTCCGCTCACTGCAACCTCCGCCT 8406 |||||| || ||||||||||||| | ||| | || ||||||||||||||| |||| Sbjct 593 CTCTGTCATCCTGGCTGGAGTGCAG--GTCTGCCACCTTGGCTCACTGCAACCTCTGCCT 650 Query 8407 CCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAG 8466 ||| || ||||| ||||||||||| |||||||| ||| ||||||| |||||||| Sbjct 651 CCCAGGACCAAGCGATTCTCCTGCCCCAGCCTCCCTAGTTGCTGGGAATACAGGCATGTA 710 Query 8467 CCACCACGCCAAGCTAA-TTTTTGTATTT 8494 |||||||||| |||||| ||||||||||| Sbjct 711 CCACCACGCCCAGCTAATTTTTTGTATTT 739 >seq1192 Length=529 Score = 120 bits (132), Expect = 3e-22 Identities = 110/137 (80%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 8482 AATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACT 8541 || |||| ||||| |||| ||| ||||||||| |||||| ||||||||||||||| Sbjct 448 AAGTTTTCTATTTCGAGTAAAGACGTAATTTCACCATTTTGGCCGGGCTGGTCTCGAACT 389 Query 8542 CCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAG--TGCTGGGATTACAGGCATG 8599 || ||||| ||||||| || ||||||||||||||||| |||||||| ||||| || Sbjct 388 CCCGACCT--AGTGATCCGCCCGCCTCGGCCTCCCAAAGACTGCTGGGAGTACAGATGTG 331 Query 8600 AGCCACCGCGCCTGGCC 8616 ||||||| ||| |||| Sbjct 330 AGCCACCATGCCCGGCC 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521478424176600