Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq975 140 8e-28 seq785 136 1e-26 seq1077 114 3e-20 >seq975 Length=62782 Score = 140 bits (154), Expect = 8e-28 Identities = 150/198 (76%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||||||||| ||||| || ||||| ||||| || || ||||| Sbjct 61127 AAAATGC---AAATCTTCGTGAAAACCCTCACGGGGAAAACCATCACGCTGGACGTGGAG 61071 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || |||||||| || || || || || || ||||| ||||| || || || Sbjct 61070 CCTTCGGATACCATCGAAAATGTAAAGGCGAAAATCCAAGACAAGGAAGGCATTCCGCCT 61011 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || || ||||| |||||||||||||| ||||| ||||| || | ||| Sbjct 61010 GATCAGCAGCGTCTGATTTTCGCTGGAAAACAGCTCGAGGATGGGAGGACCCTCTCGGAT 60951 Query 178095 TATAACGTCCAAAAAGAA 178112 || ||| |||| || ||| Sbjct 60950 TACAACATCCAGAAGGAA 60933 >seq785 Length=51992 Score = 136 bits (150), Expect = 1e-26 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||||||||| ||||| || || || || || || ||||| Sbjct 300 CAGATCTTTGTCAAGACTCTCACAGGGAAAACCATTACTCTGGATGTTGAGCCATCAGAT 241 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||| ||||| || ||||| || ||||| || ||||| Sbjct 240 ACCATCGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGCAG 181 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| || ||||| || ||||| ||||| ||| | ||||| ||| | Sbjct 180 CGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTACAACATT 121 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || ||||| || ||| | ||| || Sbjct 120 CAGAAGGAGTCAACCCTTCATTTGGTTCTG 91 >seq1077 Length=15226 Score = 114 bits (126), Expect = 3e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 ||||| |||||||| || || || |||||||||||| || ||||| || ||||| || Sbjct 17 TCAGATACCATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCTGAT 76 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 ||||| || || || || ||||| || ||||| || ||||| ||||| ||| | ||||| Sbjct 77 CAGCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACACTTTCTGATTAC 136 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||| | || || || ||||| || ||| | ||| || Sbjct 137 AACATTCAGAAGGAGTCAACCCTTCATTTGGTTCTG 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203708543897986