Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1726 91.5 3e-13 seq1654 91.5 3e-13 seq819 91.5 3e-13 >seq1726 Length=48871 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||| | ||||||||||||||||||||||| ||||||| |||||||||| |||||||| Sbjct 115 TTGCCGATTTAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGA 174 Query 165768 GCCCC 165772 ||||| Sbjct 175 GCCCC 179 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| Sbjct 1505 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGAGCCCC 1560 >seq1654 Length=49764 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||| | ||||||||||||||||||||||| ||||||| |||||||||| |||||||| Sbjct 313 TTGCCGATTTAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGA 254 Query 165768 GCCCC 165772 ||||| Sbjct 253 GCCCC 249 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| Sbjct 4891 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGAGCCCC 4946 >seq819 Length=85857 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||| | ||||||||||||||||||||||| ||||||| |||||||||| |||||||| Sbjct 19364 TTGCCGATTTAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCGCGGGTTCGA 19423 Query 165768 GCCCC 165772 ||||| Sbjct 19424 GCCCC 19428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057777715241450