Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq144 104 2e-17 seq669 84.2 2e-11 >seq144 Length=153386 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| || || || ||||| ||||| |||||||| ||| | || || || | Sbjct 49865 AAGATGCAAATTTTTGTGAAGACGCTAACGGGTAAAACCATTACCCTTGATGTGGAGCCT 49806 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| ||| || | ||||| ||||| || || | ||| Sbjct 49805 TCTGACACTATCGAAAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGAC 49746 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| || || || ||||| || |||| | || ||| ||||||| Sbjct 49745 CAGCAGCGCCTTATCTTTGCTGGGAAGCAGCTTGATGACGGCAGAACTCTCTCCGACTAC 49686 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||||| ||| || || || || Sbjct 49685 AACATTCAGAAGGAAAGCACACTCCACCTGGT 49654 >seq669 Length=99412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 116637 TGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGT 116696 ||||| |||||||| ||||| ||||| || |||||||| | ||||| | || || Sbjct 69775 TGTGGGAGATGTACAAGAAGGCAGAGGCTTCTTTCTGGACAGCAGAGGAAATTGATATG- 69717 Query 116697 CCAAGGACACG--AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||| | | | ||||||| ||| || |||||||||| | || ||||| || || Sbjct 69716 -CAAGCAGATTTAACAGACTGGGGGCGTCTGGACGACAACGAAAGACACTTCATTAAACA 69658 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAG 116778 ||| || ||||| ||||||||||| Sbjct 69657 CGTTCTCGCCTTCTTCGCCGCCAG 69634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515197206580400