Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq200 114 1e-20 >seq200 Length=58787 Score = 114 bits (126), Expect = 1e-20 Identities = 183/262 (70%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || ||||| |||| || || ||| | || ||| | | ||||| | || || Sbjct 58442 TCTACAGTAAATTTAATAGCATCTGCTGCTGCTTGTGTGCGGAAGTAATAAAGCCCTGTC 58383 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || | ||| || | ||| ||||| | | | |||||||||||| |||||| Sbjct 58382 TTTAAACCTCTTGACCAACCATGAAAGTGCATTGTAGATAATTTTGCGTATGTCGGATTA 58323 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 |||| || | | |||||| |||||||| ||||| |||| || || ||||| Sbjct 58322 ATCATATGAATATTTAACGATTGAGATTGATCTACAAACGGTGCTCTATCTGCAGCCATA 58263 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 || | ||||| | |||| ||||||||| || |||||||||| || |||||||| || Sbjct 58262 TCAATAATACTTCTTTGTTTTATCTCCCACACTGTTTTATATAATTCTTTTATATCTTCA 58203 Query 37030 GGTA---AATCTAAATGTTGAA 37048 || | |||| |||||||| Sbjct 58202 GGCATCCCTTCTATATGTTGAA 58181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468504799847600