Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq200 150 2e-31 >seq200 Length=58787 Score = 150 bits (166), Expect = 2e-31 Identities = 379/565 (67%), Gaps = 16/565 (3%) Strand=Plus/Minus Query 71452 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA 71511 ||||| || || ||||| | |||| || | || |||||| || | || || Sbjct 57065 TCGAAGATATTTTTATTAATATCTCTAGCAGCAGGAGAATCAAAAGGCAGACGTAGAAGT 57006 Query 71512 ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAA 71571 | ||| || ||||| | ||| || || || | ||||||||| || ||||| ||| Sbjct 57005 AGAAATGCATCTGCAAGTCCCTGTACACCTAAACCGATAGGCCTATGTCTGAGATTGCTT 56946 Query 71572 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACT 71631 | ||||| || |||||||| ||||| |||| ||||| ||||| |||||||| Sbjct 56945 CGTCTTGCTTCGGGTATAGGATAGTAATTTCTATCGATAATATTATTAAGATTTCTAGTC 56886 Query 71632 ATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCC-CATCTAT-----TACA 71685 || || || | ||||| ||||| || | | |||||| || | ||| | |||| Sbjct 56885 ATAACCTTAATAACATCTTTTAGCTTATCATAGTCAAATGTCTTCTTCTCTGCATCTACA 56826 Query 71686 AACACGTTCAAGGCA-ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATA 71744 || |||| || | ||||| || ||||| || || ||||| || | || | ||| Sbjct 56825 AA-ACGTGGGAGAGATACAGACGCAAGATTGCATACAGCTACTTCTTCAGGGCTTGTATA 56767 Query 71745 TTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 71804 ||| | || |||| ||||||||| || | | ||||||| || || ||||| || Sbjct 56766 TTGAACAACTTCACAGCAAAGATTGCTTGATCGTAGAGTTCCTAGATGCTGATGATTGCT 56707 Query 71805 CTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 71864 |||| | || || ||||| ||||| | ||| |||| || || || || ||||||| || Sbjct 56706 CTTTCTATTGCATGCATCTTTATACAACATATACGGTGTCCCGGTCTCTATCTGAGCTTG 56647 Query 71865 TATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTT--TTCTCT 71921 || ||||| ||| | | || |||| |||| | || | | ||| | |||||| Sbjct 56646 TAATATCGCAAACCATA-GCTTCTGAGCAGGTATTGTCTT--TCTCCCTCGTCCTTCTCT 56590 Query 71922 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCC-AGGAC 71980 ||||| | ||||||| | | ||||| || ||||| ||| ||| || ||| | Sbjct 56589 CTCGTACTTCTCATATAATGCTACAAACTCATCGCCCCA-GCAACTCGTAAGCCCAGGGC 56531 Query 71981 ATTCATTCGGACACATCAATGACCA 72005 ||||| ||||||||||| | ||| Sbjct 56530 ATTCACAAGGACACATCAACGTCCA 56506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671110550745400