Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq200 125 9e-24 >seq200 Length=58787 Score = 125 bits (138), Expect = 9e-24 Identities = 397/600 (66%), Gaps = 24/600 (4%) Strand=Plus/Minus Query 62615 ACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC 62674 ||| || || ||||| || | || || |||||||| || ||||| | |||| || Sbjct 57096 ACTTGCTTCGCATGCAGCGAAGTATATACACTCGAAGATATTTTTATTAATATCTCTAGC 57037 Query 62675 TTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACC 62734 | | |||||| || | || || | ||| || || || | ||| || ||||| Sbjct 57036 AGCAGGAGAATCAAAAGGCAGACGTAGAAGTAGAAATGCATCTGCAAGTCCCTGTACACC 56977 Query 62735 AATACCGATAGGTCTATGTCTCTTATTAGAGATT--TCA-GCTTCTGGAATAGGATAATA 62791 | ||||||||| |||||||| ||| | || || ||||| || |||||||| || Sbjct 56976 TAAACCGATAGGCCTATGTCTGAGATT---GCTTCGTCTTGCTTCGGGTATAGGATAGTA 56920 Query 62792 ATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTT 62851 ||| |||| ||||| ||||| |||||||| || || || | ||||| || || || Sbjct 56919 ATTTCTATCGATAATATTATTAAGATTTCTAGTCATAACCTTAATAACATCTTTTAGCTT 56860 Query 62852 GAGAAAATCAAATCGCC-CATCTAT-----TACAAACATGTTCAAGGCA-ACAGATGCCA 62904 | | |||||| | | ||| | |||||| | || || | ||||| || | Sbjct 56859 ATCATAGTCAAATGTCTTCTTCTCTGCATCTACAAA-ACGTGGGAGAGATACAGACGCAA 56801 Query 62905 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 62964 |||| || || ||||| || | || | |||||| | | ||| ||||||||| | Sbjct 56800 GATTGCATACAGCTACTTCTTCAGGGCTTGTATATTGAACAACTTCACAGCAAAGATTGC 56741 Query 62965 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63024 | | | |||||||| || || ||||| |||||| | || || ||||| ||||| | Sbjct 56740 TTGATCGTAGAGTTCCTAGATGCTGATGATTGCTCTTTCTATTGCATGCATCTTTATACA 56681 Query 63025 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GA 63083 || | || || || || || ||||||| || || ||||| ||| | | || || Sbjct 56680 ACATATACGGTGTCCCGGTCTCTATCTGAGCTTGTAATATCGCAAACCATA-GCTTCTGA 56622 Query 63084 GCCTTTATTATAGATTTGTATCTCCT--TTCTCTTTCGTATAGTGTATACAATCGTTCGA 63141 || |||| | ||| | ||| | |||||| ||||| ||| ||| | | | Sbjct 56621 GCAGGTATTGTC--TTTCTCCCTCGTCCTTCTCTCTCGTACTTCTCATATAATGCTACAA 56564 Query 63142 ACTCGTCTCCCCA--AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCA 63199 |||| || ||||| ||| | || | ||||| |||||| ||||||||||||| ||| Sbjct 56563 ACTCATCGCCCCAGCAAC-TCGTA-AGCCCAGGGCATTCACAAGGACACATCAACGTCCA 56506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622920607941400