Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq200 102 2e-16 >seq200 Length=58787 Score = 102 bits (112), Expect = 2e-16 Identities = 337/518 (65%), Gaps = 12/518 (2%) Strand=Plus/Plus Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG 364101 ||||| || || | ||| || |||| || ||||| || || ||| | | ||| Sbjct 56551 TGGGGCGATGAGTTTGTAGCATTATATGAGAAGTACGAGAGAGAAGGACGAGGGAGAAAG 56610 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 ||||| || || ||||||||||||||||| || | | | ||||| ||||| || ||| Sbjct 56611 ACAATACCTGCTCAGAAGCTATGGTTTGCGATATTACAAGCTCAGATAGAGACCGGGACA 56670 Query 364162 CCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221 || ||||||||||| |||||| | ||||| | ||| ||| || ||||| || || || Sbjct 56671 CCGTATATGTTGTATAAAGATGCATGCAATAGAAAGAGCAATCATCAGCATCTAGGAACT 56730 Query 364222 ATTC-AGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGC 364280 | | | || ||||| || || || || || |||| || || || || || Sbjct 56731 CTACGATCA-AGCAATCTTTGCTGTGAAGTTGTTCAATATACAAGCCCTGAAGAAGTAGC 56789 Query 364281 CGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA-----AAAGATG-GTACTTT 364334 ||||| || |||||||| | | || || |||||| | ||| | || || Sbjct 56790 TGTATGCAATCTTGCGTCTGTATCTCTCCCACGTTTTGTAGATGCAGAGAAGAAGACATT 56849 Query 364335 TGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTT 364392 |||| | | | || | || || | | | ||| ||| | ||||| | || || Sbjct 56850 TGACTATGATAAGCTAAAAGATGTTATTAAGGTTATG--ACTAGAAATCTTAATAATATT 56907 Query 364393 ATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCG 364452 ||||| | ||||| ||||| || || ||||| || ||| | | ||| | || Sbjct 56908 ATCGATAGAAATTACTATCCTATACCCGAAGCAAGACGAAGCAATCTCAGACATAGGCCT 56967 Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGAT 364512 || ||| | ||||||||||| || || || | ||| | | || || | |||||| Sbjct 56968 ATCGGTTTAGGTGTACAGGGACTTGCAGATGCATTTCTACTTCTACGTCTGCCTTTTGAT 57027 Query 364513 TCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGA 364550 || |||| ||| | | | | ||||| | ||||| || Sbjct 57028 TCTCCTGCTGCTAGAGATATTAATAAAAATATCTTCGA 57065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303296572170530