Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq443 98.7 9e-16 seq144 87.8 2e-12 >seq443 Length=45324 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | ||| |||||||| || || | ||| ||||| || |||||||| ||||| Sbjct 301 AGCCACCTCTCAAGCGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATGTTATAATCAG 242 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || || | | || || ||||||||||| || | || | ||||||||| || |||| Sbjct 241 ACAGCGTCCTCCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAG 182 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCG 131184 | ||||| || ||||| ||| | | || ||| | | ||| | ||| || | | ||| Sbjct 181 GAATTCCCTCCTTGTC-CTGAATCTTTGCCTTCACGTTCTCGATAGTGTCTGATGGCTCA 123 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 | || | || | || || || || ||||| || || || || |||||| Sbjct 122 ACATCAAGAGTGATCGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCATG 72 >seq144 Length=153386 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 ||||| ||||||||||| ||| | || | ||| || |||||||| || || || Sbjct 49672 TCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCGTCATCAAGCTGCTTCCCAGCAAAG 49731 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | ||||||||||| ||||| || || || ||||| ||| || ||| | | Sbjct 49732 ATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTT 49791 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | ||| || | | ||| | || | ||||| ||||||||| ||||| || || || Sbjct 49792 TCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATGGTTTTACCCGTTAGCGTCTTCACA 49851 Query 131224 AAAATCTGCAT 131234 ||||| ||||| Sbjct 49852 AAAATTTGCAT 49862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471992650953600