Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq443 129 5e-25 seq144 109 5e-19 seq743 105 6e-18 >seq443 Length=45324 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| |||| || || | ||||| | || || ||| | || Sbjct 73 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACGATCACTCTTGATGTTGAGCCATCA 132 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||||||| |||| ||||| | ||| ||||| || || ||||| ||||| || Sbjct 133 GACACTATCGAGAACGTGAAGGCAAAGATTCA-GGACAAGGAGGGAATTCCTCCTGATCA 191 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||||||||||||||| || | ||||||| | || || ||||| || Sbjct 192 GCAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGGAGGACGCTGTCTGATTATAA 251 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || || || ||||| Sbjct 252 CATTCAGAAAGAGTCAACCCTTCACTTGGTGCT 284 >seq144 Length=153386 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || |||||| |||| || | || |||||| | ||| Sbjct 49862 ATGCAAATTTTTGTGAAGACGCTAACGGGTAAAACCATTACCCTTGATGTGGAGCCTTCT 49803 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| ||||| ||| ||| ||||| || || ||||| |||||||| Sbjct 49802 GACACTATCGAAAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 49743 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| ||||| || || || | || || | | ||| | ||| ||||| Sbjct 49742 CAGCGCCTTATCTTTGCTGGGAAGCAGCTTGATGACGGCAGAACTCTCTCCGACTACAAC 49683 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || ||| ||| || || Sbjct 49682 ATTCAGAAGGAAAGCACACTCCA 49660 >seq743 Length=20979 Score = 105 bits (116), Expect = 6e-18 Identities = 122/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||||||||| || ||||| ||||| | || || || ||||||| | || || ||| | Sbjct 161 AACAATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACCATCACTCTAGATGTTGAGCC 102 Query 25055 GTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || |||||||||||| | ||| |||| | ||| ||||| || || ||||| |||| Sbjct 101 ATCAGACACTATCGAGAACGTAAAGGCAAAGATTCAA-GACAAGGAGGGAATTCCTCCTG 43 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 | || ||||| |||||||||||||||| || | ||||||| Sbjct 42 ATCAGCAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAAGATG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433309964753225