Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq443 125 6e-24 seq144 118 9e-22 seq200 114 1e-20 seq743 87.8 2e-12 >seq443 Length=45324 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || || || ||| |||||||||| || || | | Sbjct 73 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACGATCACTCTTGATGTTGAGCCATCA 132 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || ||| ||||| ||||||||||| ||||| || ||||| Sbjct 133 GACACTATCGAGAACGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCAG 192 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||||||||| ||| | || ||| | || | || ||||| ||| Sbjct 193 CAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGGAGGACGCTGTCTGATTATAAC 252 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||| || ||| | || || || |||| ||| | || || Sbjct 253 ATTCAGAAAGAGTCAACCCTTCACTTGGTGCTGCGCTTGAGAGGTGG 299 >seq144 Length=153386 Score = 118 bits (130), Expect = 9e-22 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||||||||| || || |||| |||||||| | || ||||| ||||| | Sbjct 49865 AAGATGCAAATTTTTGTGAAGACGCTAACGGGTAAAACCATTACCCTTGATGTGGAGCCT 49806 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || ||| || || ||||||||||||||||| || || Sbjct 49805 TCTGACACTATCGAAAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGAC 49746 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || ||||| ||||| || || ||| | || || | | || ||||||| ||| Sbjct 49745 CAGCAGCGCCTTATCTTTGCTGGGAAGCAGCTTGATGACGGCAGAACTCTCTCCGACTAC 49686 Query 22396 AACATTCAAAAAGAA 22410 |||||||| || ||| Sbjct 49685 AACATTCAGAAGGAA 49671 >seq200 Length=58787 Score = 114 bits (126), Expect = 1e-20 Identities = 200/287 (70%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 128782 TCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTG-GTGCGCAAATAGTACATGCCTGT 128840 || || |||||||||||||| || |||| | ||||| ||||| || || || | ||||| Sbjct 58442 TCTACAGTAAATTTAATAGCATCTGCTG-CTGCTTGTGTGCGGAAGTAATAAAGCCCTGT 58384 Query 128841 TTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGTTG 128900 || ||||| ||| |||| || | ||| || || | || |||||| || || | Sbjct 58383 CTTTAAACCTCTTGACCAACCATGAAAGTGCATTGTAGATAATTTTGCGTATGTCGGATT 58324 Query 128901 ACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCAT 128960 | ||| | |||||| || |||||| |||||| | ||| || | | ||| |||||||| Sbjct 58323 AATCATATGAATATTTAACGATTGAGATTGATCTACAAACGGTGCTCTATCTGCAGCCAT 58264 Query 128961 ACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTT 129020 | |||| | | || | ||| || |||||||| ||||| || | ||| | | | || Sbjct 58263 ATCAATAATACTTCTTTGTTTTATCTCCCACACTGTTTTATATAATTCTTTTATATCTTC 58204 Query 129021 TGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGC-AATAATT 129066 || || |||| || | || ||||| || ||| ||| | ||||| Sbjct 58203 AGGCATCCCTTCTATATGTTGAACGCTCCCATTGAATGCTATTAATT 58157 >seq743 Length=20979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || ||||||| || || || | | Sbjct 157 ATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACCATCACTCTAGATGTTGAGCCATCA 98 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || ||| ||||||||||||||||| ||||| || ||||| Sbjct 97 GACACTATCGAGAACGTAAAGGCAAAGATTCAAGACAAGGAGGGAATTCCTCCTGATCAG 38 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 || |||||||| ||||||||||| ||| | || ||| Sbjct 37 CAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAAGAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419710530789475