Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq443 89.7 4e-13 >seq443 Length=45324 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| |||||||||| ||||| || ||| ||||||||||| ||||| | | Sbjct 299 CCACCTCTCAAGCGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATGTTATAATCAGAC 240 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | | || |||| |||||||||||||| || || ||||||||||| || Sbjct 239 AGCGTCCTCCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGA 180 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | | ||| |||||| ||| ||| ||| | | ||| | | | || | | || Sbjct 179 ATTCCCTCCTTGTCCTGAATCTTTGCCTTCA-CGTTCTCGATAGTGTCTGATGGCTCAAC 121 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || || || || ||||||||||||||||| Sbjct 120 ATCAAGAGTGATCGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397045874138830