Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq443 163 7e-35 seq144 123 6e-23 seq743 116 9e-21 >seq443 Length=45324 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| || || ||||| || || | ||| || |||| || ||||| ||||| Sbjct 285 CAGCACCAAGTGAAGGGTTGACTCTTTCTGAATGTTATAATCAGACAGCGTCCTCCCATC 226 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| || || ||||||||||| || ||| |||||| || || Sbjct 225 TTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCTTGTC 166 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 |||||||||| ||||||| |||| ||||||| || || ||||| | |||||||| Sbjct 165 CTGAATCTTTGCCTTCACGTTCTCGATAGTGTCTGATGGCTCAACATCAAGAGTGATCGT 106 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| |||||||| ||||| Sbjct 105 CTTGCCAGTCAGAGTCTTCACAAAGATTTG 76 >seq144 Length=153386 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || |||||||| || ||||| || | ||||||||| | | ||| || || || || Sbjct 49654 ACCAGGTGGAGTGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCGTCATCA 49713 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| || || ||||| || ||||||||||| ||| ||| || || ||||| Sbjct 49714 AGCTGCTTCCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGG 49773 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 |||||| |||||| ||||| ||||| | | || ||||| | || || || ||| Sbjct 49774 ATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATGGTTTTA 49833 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || |||||||||||||| Sbjct 49834 CCCGTTAGCGTCTTCACAAAAATTTG 49859 >seq743 Length=20979 Score = 116 bits (128), Expect = 9e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 199473 CATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTC 199532 |||||||||||||||| ||||| || || ||||||||||| || ||| |||||| || Sbjct 1 CATCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCT 60 Query 199533 GCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || ||||||||| ||| ||| |||| ||||||| || || ||||| | |||| Sbjct 61 TGTCTTGAATCTTTGCCTTTACGTTCTCGATAGTGTCTGATGGCTCAACATCTAGAGTGA 120 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| |||||||| || || ||||| || || Sbjct 121 TGGTCTTCCCCGTGAGGGTCTTGACAAAGATCTG 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178870016653805