Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq843 210 9e-49 seq3076 129 2e-24 seq443 125 3e-23 seq144 100 1e-15 seq743 87.8 7e-12 >seq843 Length=181884 Score = 210 bits (232), Expect = 9e-49 Identities = 477/710 (67%), Gaps = 12/710 (2%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| | || || ||||| || || || | ||||||||||||||| | | || | | Sbjct 178277 GCAGTAGGTATAGATCTCGGGACGACATATTCATGTGTAGGTGTGTGGAAGAACGACGGT 178218 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 ||||| |||||||| ||||| || || |||| || || || | || ||||| Sbjct 178217 GTAGAGATTATAGCGAATGATCAGGGTAATAGAACGACACCGTCTTATGTTGCATTTACA 178158 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 ||| |||| || | |||| | || || || |||| ||| ||| | ||| Sbjct 178157 GATACAGAGAGGTTAGTAGGAGATGCAGCAAAGAATCA--GGTCGCAAGAAACCCTGAAA 178100 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 | || || | |||||||||| | ||||| || | | || |||||| ||||||| Sbjct 178099 ATACTGTCTTTGATGCTAAAAGATTAATCGGAAGAAAGTTCGATGATCCGGCTGTACAGG 178040 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGT---AGTAAATCAAAAAGGAAAGCC-CTATATT 451207 ||| | ||| || | | | || || | || | ||| ||||| ||| || Sbjct 178039 CAGATATGAAACACTGGCCGTTTACAGTTAAAGCAGGTCCAGGAGGCAAGCCTCTA-ATA 177981 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 |||| |||||| |||| | || || ||| ||||||||| || ||| | ||||| Sbjct 177980 GAAGTTAATTATCAAGGCAGCAAGAAGACCTTTCATCCTGAAGAGATATCAGCAATGGTC 177921 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 | | || |||||||||| ||| ||| || || || ||||| || || || Sbjct 177920 TTGATGAAGATGAAAGAAATAGCTGAAGCATTCATAGGGAAAGAAGTTAAAGAAGCTGTT 177861 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 |||||||| || || ||||| || || ||||| | |||||||| ||||||||||| | Sbjct 177860 ATTACTGTACCTGCATATTTTAACGACTCACAAAGACAAGCAACAAAAGATGCAGGGACT 177801 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 || || || |||||||| | ||||||||||||| ||||| ||||| ||| | ||||| Sbjct 177800 ATCGCAGGATTAAATGTCTTAAGAATTATTAATGAGCCTACTGCAGCAGCTATTGCATAC 177741 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || ||| | | ||| || || | || | ||| | | | |||||| | || || Sbjct 177740 GGTTTAG--ATAAGAAAGGACAC-GGGGAGATGAATGTGCTTATCTTTGATATGGGAGGG 177684 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 || || |||| ||| || | |||||||||| || | ||||| || || || || Sbjct 177683 GGTACCTTTGATGTATCTTTATTAACAATTGAAGACGGTATTTTTGAGGTTAAAGCTACA 177624 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGA 451617 ||| ||||| ||| ||||||||||||| |||||||| | |||| || Sbjct 177623 GCTGGAGATACACATTTAGGAGGTGAAGACTTTGATAATAGACTTGTAGA 177574 >seq3076 Length=33010 Score = 129 bits (142), Expect = 2e-24 Identities = 192/272 (71%), Gaps = 9/272 (3%) Strand=Plus/Plus Query 451241 GCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATAT 451300 || ||||| ||| |||| | ||||| | ||||||||||||| ||||| | || Sbjct 29305 GCGCCTGAGGAAGTTTCTGCAATGGTGTTGGGTAAAATGAAAGAAGTTGCAGAGAACTAC 29364 Query 451301 ATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAA 451360 | ||| ||| | ||||||| |||| || ||||| || ||||| |||||||| Sbjct 29365 CTCGGTAAAGAAGTCAAGAATGCAGTCGTTACCGTGCCCGCATACTTCAACGATGCACAG 29424 Query 451361 CGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAAT 451420 || ||||| || || ||||||||| ||||| ||||| ||||| |||| || || || Sbjct 29425 CGCCAAGCTACAAAGGATGCAGGAGCAATTGCAGGTTTGAATGTCATTCGTATCATCAAC 29484 Query 451421 GAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaa 451480 ||||| || || || ||| | |||||||| || | | ||||| ||| ||||| Sbjct 29485 GAACCCACTGCCGCAGCTATTGCATATGGGCTCG-------ACAAGAA--AGACGAAAAG 29535 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAAC 451512 | |||| | || | ||| |||||||||| || Sbjct 29536 ACTATTCTTGTCTACGATCTTGGTGGAGGTAC 29567 >seq443 Length=45324 Score = 125 bits (138), Expect = 3e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||||||| || || || |||||||||||||| |||| Sbjct 73 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACGATCACTCTTGATGTTGAGCCATCA 132 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | || ||| ||||| || ||||| ||||||||||||||||| Sbjct 133 GACACTATCGAGAACGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCAG 192 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | ||||| | || || || || |||||||| || || || | |||||||| Sbjct 193 CAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGGAGGACGCTGTCTGATTATAAC 252 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || |||| |||||||| || Sbjct 253 ATTCAGAAAGAGTCAACCCTTCACTTGGT 281 >seq144 Length=153386 Score = 100 bits (110), Expect = 1e-15 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || || |||||||| ||||| |||||||| || | ||| Sbjct 49862 ATGCAAATTTTTGTGAAGACGCTAACGGGTAAAACCATTACCCTTGATGTGGAGCCTTCT 49803 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || ||| || || || ||||| || ||||||||||| || Sbjct 49802 GACACTATCGAAAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 49743 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | ||||| || ||||| || || |||||| | | || || || Sbjct 49742 CAGCGCCTTATCTTTGCTGGGAAGCAGCTTGATGACGGCAGAACTCTCTCCGACTACAAC 49683 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTA 391259 ||| | ||||| ||||| ||| | ||| Sbjct 49682 ATTCAGAAGGAAAGCACACTCCACCTGGTA 49653 >seq743 Length=20979 Score = 87.8 bits (96), Expect = 7e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || || || || || || || ||||| |||||||| |||| Sbjct 158 AATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACCATCACTCTAGATGTTGAGCCATC 99 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || || | || ||| |||||||| ||||| ||||||||||||||||| Sbjct 98 AGACACTATCGAGAACGTAAAGGCAAAGATTCAAGACAAGGAGGGAATTCCTCCTGATCA 39 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATG 391206 || ||| | ||||| | || || || || ||||||| Sbjct 38 GCAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAAGATG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975631953058820