Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq843 553 1e-151 seq3076 114 1e-19 >seq843 Length=181884 Score = 553 bits (612), Expect = 1e-151 Identities = 1019/1471 (69%), Gaps = 40/1471 (3%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||||| ||||| | |||||| || || || | ||| || || || || || || || || Sbjct 176818 GCAGTTACATTCATAATACCGTTTGCGTCAATATCGAACGTCACCTCTATCTGCGGTACG 176877 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 |||||| | || || || || || || |||| ||| | || | ||||||||| ||| Sbjct 176878 CCTCTCGGTGCCGGCGGAATACCGTCTAAATGAAACTTACCTAAGAGATTATTATCCTTA 176937 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | || || || || || | ||| ||| || | | |||||||||| ||| Sbjct 176938 GTCATAGCTCTCTCTCCTTCAAAGACTTGAATAAGTACACCCGGCTGATTATCTGCATAT 176997 Query 517439 GTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 ||||| || | |||| || || || ||| |||||||| ||||| ||||| | || || Sbjct 176998 GTTGTGAAGA-TCTGAGACTTCTTTGTAGGTATTGTTGTATTTCTTTCAATCAATTTCGT 177056 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | ||| ||||||||||||||||| | || ||||| | ||||| | ||| | | Sbjct 177057 CATTACACCCCCTGCTGTTTCTAAACCTAATGATAGAGGTGCAACATCTAATAGTAATAG 177116 Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATA--GCTGCTTGAATAGCAGCACCA 517615 || ||| | || | | ||| ||| | |||| |||||||||| ||||||||| Sbjct 177117 ATCTTGTACTTGA-CTGCTGTTA-ACCCCCTTCAATATTGCTGCTTGAACTGCAGCACCA 177174 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 |||||||||||||||||||| |||| | | | | ||||| |||||||| | | Sbjct 177175 TATGCAACAGCTTCATCAGGGTTAATCGATCGGCAAGGCTCCTTACCGTTGAAAAACTCT 177234 Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 || |||||| || ||| |||||||||| ||||| || || | ||| | |||||| Sbjct 177235 TGAATAAGTTGCTGTATCTTCGGAATACGAGTAGATCCACCGACAAGTACTACTTCATGT 177294 Query 517736 AC-CTGTGATTTATCCA----GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGAC 517790 || ||| | |||||| | | | | || | ||| |||||||| ||| ||||| Sbjct 177295 ACACTGCG-TTTATCAATGCCGCTGTCTTTC----AGAACCTTTTCAACAGGTACAAGAG 177349 Query 517791 CCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 517850 || || | || || |||||||| || |||||||| || | |||| || Sbjct 177350 AGTTCCTGAAGTAATCCATGCATAGTTCTTCAAAGCGAGCTCTAGAGAGGGAGACAGAAT 177409 Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 ||||||| || || || ||||| || | ||||| || | ||| || |||| || Sbjct 177410 AATCAATACCCTCAAATAAAGAGTCTATCTCAATTGTTGCTTGTGTGCTGCTTGATAATG 177469 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT-TC 517969 | ||| || | ||||||| ||| | || | | ||| || ||| ||| || Sbjct 177470 TTCTTTTTGCTCTTTCACATTGTGTACGAAGACGCCTTAATGCACGA-CTGTTTGTGCTC 177528 Query 517970 AAATCTGTT-TTATATT--TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTA 518026 |||| | || |||| ||||||||||||||| ||| || | |||||| | |||| Sbjct 177529 GGATCTTTGCTTCTATTCTTTCTCTTGAAATCTTGAACGCAAAAATCTACAAGTCTATTA 177588 Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| ||||||||||| || | |||| ||| | |||||| | || | |||| || Sbjct 177589 TCAAAGTCTTCACCTCCTAAATGTGTATCTCCAGCTGTAGCTTTAACCTCAAAAATACCG 177648 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 ||||||| | || | || ||||||| ||| || || ||||||||||| ||||| ||| Sbjct 177649 TCTTCAATTGTTAATAAAGATACATCAAAGGTACCCCCTCCCATATCAAAGATAAGCACA 177708 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 ||||| || || | || ||||| | ||| || |||| ||| || ||||| || ||| Sbjct 177709 TTCATCTCCCCGTGTCCTTTCTTATCTAAACCGTATGCAATAGCTGCTGCAGTAGGCTCA 177768 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 ||||||||||| || ||||| | || || || | ||||||||||| || ||||||||| Sbjct 177769 TTAATAATTCTTAAGACATTTAATCCTGCGATAGTCCCTGCATCTTTTGTTGCTTGTCTT 177828 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 ||||| ||||||||||||||||| ||||||||||| || || | |||||||| || || Sbjct 177829 TGTGAGTCGTTAAAATATGCAGGTACAGTAATAACAGCTTCTTTAACTTCTTTCCC--TA 177886 Query 518327 TAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG-- 518382 | | |||| || ||| |||||| || | || | ||||| ||| || | ||| || Sbjct 177887 TGAATGCTTCAGCTATTTCTTTCATCTTCATCAAGACCATTGCTGATATCTCTTCAGGAT 177946 Query 518383 GGAATAT-TGCTTGGATTCATTTTGATATGATACTTC-AAAATATGGTTTATT-----AC 518435 | || | | ||| | | | |||||| ||||| | | | | || | || Sbjct 177947 GAAAGGTCTTCTT-GCTGC--CTTGATAATTAACTTCTATTAGAGGCTTGCCTCCTGGAC 178003 Query 518436 CAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAA 518495 | | | ||||| |||| ||||||| ||||||||||| || ||| | |||| | Sbjct 178004 CTGCTT---TAACTGTAAACGGCCAGTGTTTCATATCTGCCTGTACAGCCGGATCATCGA 178060 Query 518496 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTT 518555 | | ||| || ||||||| ||| |||||||| | |||||| || || |||| | | Sbjct 178061 ACTTTCTTCCGATTAATCTTTTAGCATCAAAGACAGTATTTTCAGGGTTTCTTGCGACCT 178120 Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAG 518615 ||| || ||||||||||| | | ||||| |||||||||| |||||| || || | Sbjct 178121 GATTCTTTGCTGCATCTCCTACTAACCTCTCTGTATCTGTAAATGCAACATAAGACGGTG 178180 Query 518616 TTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTA 518675 | || | |||||| ||||||||||| ||||| || || | || | ||| ||||||| Sbjct 178181 TCGTTCTATTACCCTGATCATTCGCTATAATCTCTACACCGTCGTTCTTCCACACACCTA 178240 Query 518676 CACAACTAAAAGTTGTTCCTAAATCAATACC 518706 |||| | | || || || | ||| ||||| Sbjct 178241 CACATGAATATGTCGTCCCGAGATCTATACC 178271 Score = 127 bits (140), Expect = 2e-23 Identities = 115/142 (81%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATT-TTAAGAACATCTAAA 322297 ||||||||||||||| |||||||||||| || |||||||| ||| ||||| |||| ||| Sbjct 177734 CTAAACCGTATGCAATAGCTGCTGCAGTAGGCTCATTAATAATTCTTAAG-ACATTTAAT 177792 Query 322298 CCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGT 322357 || || || | | | ||| ||||||||||| |||| ||| ||||||||||| ||| Sbjct 177793 CCTGCGATAGTCCCTGCATCTTTTGTTGCTTGTCTTTGTGAGTCGTTAAAATATGCAGGT 177852 Query 322358 ACAGTAATAACTGCTTTATTAA 322379 ||||||||||| |||| |||| Sbjct 177853 ACAGTAATAACAGCTTCTTTAA 177874 >seq3076 Length=33010 Score = 114 bits (126), Expect = 1e-19 Identities = 189/269 (70%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 || ||| ||| || ||||| | ||| | | ||| | | || |||| ||||| | Sbjct 29576 ACGTCAAAGGTACCTCCACCAAGATCGTAGACAAGAATAGTCTTTTC---GTCTT---TC 29523 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || || || ||||| |||| ||| || ||||| ||||| || || || | | ||||| Sbjct 29522 TTGTCGAGCCCATATGCAATAGCTGCGGCAGTGGGTTCGTTGATGATACGAATGACATTC 29463 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | ||| |||||| ||||||||| || || ||||| | |||| |||||| || ||||| Sbjct 29462 AAACCTGCAATTGCTCCTGCATCCTTTGTAGCTTGGCGCTGTGCATCGTTGAAGTATGCG 29403 Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT-TGCCGTTTGTTT 518346 || || |||| || |||| | ||||||||||| | | || || ||| || ||| Sbjct 29402 GGCACGGTAACGACTGCATTCTTGACTTCTTTACCGAGGT-AGTTCTCTGCAACTTCTTT 29344 Query 518347 CATTTTACTTAAAATCATTGATGAAATTT 518375 |||||||| || | ||||| |||| || Sbjct 29343 CATTTTACCCAACACCATTGCAGAAACTT 29315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780652936450990