Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq843 452 5e-122 seq3076 125 9e-24 >seq843 Length=181884 Score = 452 bits (500), Expect = 5e-122 Identities = 1211/1837 (66%), Gaps = 46/1837 (3%) Strand=Plus/Plus Query 6344 TACATCTTTGTAATGATTGGTGTACATACATCTGTAAGTTCCTTCTGTTTAGCCTCAAAC 6403 ||||||||||||| || || || |||||| || || ||| || |||||||| || ||| Sbjct 176455 TACATCTTTGTAACAATAGGCGTGCATACAGCTTCAACTTCTTTTTGTTTAGCTTCGAAC 176514 Query 6404 TCTTCTGTTTCGGCAGATTGGTTCGCGTCTAACCATTCAAGTACCTCCGAAA-------- 6455 |||||| | || || || ||| || | ||| || | | ||| | || Sbjct 176515 TCTTCTTTCTCAGCTAGCTGATTCTTATCAAGCCAGTCTAATGCCTTCTGAATAGCAGAT 176574 Query 6456 -------CCT-TC-GT-TTCGACCGTTTCCTTATCCTCACCTTCAATCTTTTCGACC--- 6502 ||| || || ||| | | | |||||||| || |||||||| || Sbjct 176575 GTTGCAGCCTCTCTGTCTTCAGCAGATATCTTATCCT----TT--ATCTTTTCATCCTCC 176628 Query 6503 ---GTTCCTTTCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTC 6559 || ||| ||||| ||| || |||||||| || ||||||| || || || ||| Sbjct 176629 ATAGTACCTCTCATTGAATAGCAATAGTTTTCAAGTGCATTCTTAGCTTCTACTCTTT-- 176686 Query 6560 GCGTACTT--TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGT 6617 | || || |||||||||| | ||||| || || || || |||||| | || || | Sbjct 176687 GTTTATTTGCTTCATCTTCAGCCTTATATTTCTCAGCTTCAGCTACCATCCTATCGATTT 176746 Query 6618 CTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGG 6677 | ||| || || || ||||| || ||||| || || | | |||||||| | | Sbjct 176747 CACCTTGGCTTAGTCGTCCTTTATCGTTTGTAATAGTGATTTGATTTGATTTACCGGTGT 176806 Query 6678 CCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAA 6737 ||| ||| ||| ||||||||| |||||| ||||| |||| ||||||| | || | | Sbjct 176807 TCTTTTCTGTTGCAGTTACATTCATAATACCGTTTGCGTCAATATCGAACGTCACCTCTA 176866 Query 6738 TTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAAC 6797 | || ||| || |||||||| | |||||||| ||||| ||| |||| | | | Sbjct 176867 TCTGCGGTACGCCTCTCGGTGCCGGCGGAATACCGTCTAAATGAAACTTACCTAAGAGAT 176926 Query 6798 TGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGAT 6857 | |||||| | | | | | || |||||| |||||| ||| || | || |||| Sbjct 176927 TATTATCCTTAGTCATAGCTCTCTCTCCTTCAAAGACTTGAATAAGTACACCCGGCTGAT 176986 Query 6858 TATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAA 6917 ||||| |||| |||||| || ||||| | || || || |||||||| || Sbjct 176987 TATCTGCATATGTTGTGAAGATCTGAGACTTCTTTGTAGGTATTGTTGTATTTCTTTCAA 177046 Query 6918 TAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCA 6977 | | ||||| | ||| || ||||| | || | || ||||||| || || | Sbjct 177047 TCAATTTCGTCATTACACCCCCTGCTGTTTCTAAACCTAATGATAGAGGTGCAACATCTA 177106 Query 6978 AGAGTAACAGGTCTTGAACA-GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACC 7036 | ||||| || ||||| || || | | | | ||| | || || || ||||| || Sbjct 177107 ATAGTAATAGATCTTGTACTTGACT-GCTGTTAACCCCCTTCAATATTGCTGCTTGAACT 177165 Query 7037 GTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTA 7096 | || || ||||| || || ||||| |||||||||| | | || |||||||| Sbjct 177166 GCAGCACCATATGCAACAGCTTCATCAGGGTTAATCGATCGGCAAGGCTCCTTACCGTTG 177225 Query 7097 AAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACG 7156 ||| | || | | ||| || || ||||| || || || ||||||||||| | || Sbjct 177226 AAAAACTCTTGAATAAGTTGCTGTATCTTCGGAATACGAGTAGATCCACCGACAAGTACT 177285 Query 7157 ATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216 | ||||| || | |||||| || |||| || ||||| |||||| | Sbjct 177286 ACTTCATGTACACTGCGTTTATCAATGCCGCTGTCTTTCAGAACCTTTTCAACAGGTACA 177345 Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 | | | || | ||| | ||||| || ||||| ||||| || || | | | ||| | Sbjct 177346 AGAGAGTTCCTGAAGTAATCCATGCATAGTTCTTCAAAGCGAGCTCTAGAGAGGGAGACA 177405 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 | |||||| || || |||| || || || ||||| |||| ||||| | ||| Sbjct 177406 GAATAATCAATACCCTCAAATAAAGAGTCTATCTCAATTGTTGCTTGTGTGCTGCTTGAT 177465 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 || |||| ||||| | ||||| || || | ||| | | ||||| ||| | Sbjct 177466 AATGTTCTTTTTGCTCTTTCACATTGTGTACGAAGACGCCTTAATGCACGACTGTTTGTG 177525 Query 7397 GAAATATCTTT-CTTATGTT--TACGTTTAAACTCTTCAGAG-AAGTGTCGAAGGAGTCT 7452 |||||| ||| | || | | || || |||| | | || || | ||||| Sbjct 177526 CTCGGATCTTTGCTTCTATTCTTTCTCTTGAAATCTTGAACGCAAAAATCTACA-AGTCT 177584 Query 7453 CGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGAT 7512 ||| || |||||||| || || |||||||| || || || ||||| || ||||| || Sbjct 177585 ATTATCAAAGTCTTCACCTCCTAAATGTGTATCTCCAGCTGTAGCTTTAACCTCAAAAAT 177644 Query 7513 ACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAG 7572 ||| ||||||| |||| || || |||||||| ||||| || |||| ||||| || || Sbjct 177645 ACCGTCTTCAATTGTTAATAAAGATACATCAAAGGTACCCCCTCCCATATCAAAGATAAG 177704 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 || ||| | || ||| | |||||||| | |||||| || ||||| || || || || Sbjct 177705 CACATTCATCTCCCCGTGTCCTTTCTTATCTAAACCGTATGCAATAGCTGCTGCAGTAGG 177764 Query 7633 TTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 ||||||||||| | |||||| || | || || ||||| | |||||||| || |||| Sbjct 177765 CTCATTAATAATTCTTAAGACA-TTTAATCCTGCGATAGTCCCTGCATCTTTTGTTGCTT 177823 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 ||| ||| || |||||||| || || || || || | || || || | |||| || | Sbjct 177824 GTCTTTGTGAGTCGTTAAAATATGCAGGTACAGTAATAACAGCTTCTTTAACTTCTTTCC 177883 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | | | | ||| || || |||||||| || | | ||||| | ||| |||||||||| Sbjct 177884 CTATGAATGCTTCAGCTATTTCTTTCATCTTCATCAAGACCATTGCTGATATCTCTTCAG 177943 Query 7812 CCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 ||| ||| | || | | ||| |||||| || | || || | | | || Sbjct 177944 GATGAAAGGTCTTCTTGCTGCCTTGATAATTAACTTCTATTAGAGGCTTGCCTCCTGGAC 178003 Query 7872 CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACT 7931 | | |||| || ||| ||| | ||||||||| | || || | || |||| Sbjct 178004 CTGCTTTAACTGTAAACGGCCAGTGTTTCATATCTGCCTGTACAGCCGGATCATCGAACT 178063 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 |||||||||| | | || |||||||| || || |||| ||||| | || || | Sbjct 178064 TTCTTCCGATTAATCTTTTAGCATCAAAGACAGTATTTTCAGGGTTTCTTGCGACCTGAT 178123 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGG 8051 |||| || || || || | | | || || || ||||| || || || || || | Sbjct 178124 TCTTTGCTGCATCTCCTACTAACCTCTCTGTA---TCTGTAAATGCAACATAAGACGGTG 178180 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 |||||| ||| || || || ||||| ||||| ||||| | |||||| | ||| || || | Sbjct 178181 TCGTTCTATTACCCTGATCATTCGCTATAATCTCTACACCGTCGTTCTTCCACACACCTA 178240 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | || ||||| || || || | ||| ||||| | ||| Sbjct 178241 CACATGAATATGTCGTCCCGAGATCTATACCTACTGC 178277 >seq3076 Length=33010 Score = 125 bits (138), Expect = 9e-24 Identities = 206/293 (70%), Gaps = 8/293 (3%) Strand=Plus/Minus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 ||||| ||||| ||||| ||||| || || | | || | | || | |||||||| Sbjct 29579 GAAACGTCAAAGGTACCTCCACCAAGATCGTAGACAAGAA---TAGTCTTTTCGTCTTT- 29524 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACA 7653 ||| ||||| || || || ||||| || || || ||||| || || ||||||| |||| Sbjct 29523 --CTTGTCGAGCCCATATGCAATAGCTGCGGCAGTGGGTTCGTTGATGATACGAATGACA 29466 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 |||| || ||||| | | | ||||| || || ||||| || || | |||||| ||||| Sbjct 29465 -TTCAAACCTGCAATTGCTCCTGCATCCTTTGTAGCTTGGCGCTGTGCATCGTTGAAGTA 29407 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || || || || ||||| || | | |||||| |||||||| || || || | || Sbjct 29406 TGCGGGCACGGTAACGACTGCATTCTTGACTTCTTTACCGAGGTAGTTCTCTGCAACTTC 29347 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCG 7826 ||||||||| | ||||| | |||| || |||| ||| | || |||| Sbjct 29346 TTTCATTTTACCCAACACCATTGCAGAAACTTCCTCAGGCGCCAGCTCCTTCG 29294 Score = 105 bits (116), Expect = 8e-18 Identities = 181/263 (69%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 6572 TCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAAT 6631 |||||||| | |||| || || || || | |||| | ||||| || || | | Sbjct 31186 TCTTCATCAGCAAACTTCTCTGCCTCCTGAATCATCCTCTCAATCTCATCAGGGGTAAGA 31127 Query 6632 CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCA 6691 | ||||||||||| || || |||||||| || || || | ||||||| | ||| Sbjct 31126 CGACCCTTATCATTGGTGATAGTAATCTTCTCACTCTTTCCTGTCCCCTTATCAACTGCA 31067 Query 6692 CTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCC 6751 || |||||||||||||| ||| ||||||||| ||| | |||| || || || || Sbjct 31066 CTAACATTCAAAATACCGTTTCTATCAACATCAAACGTAACATCTATCTGAGGAACTCCA 31007 Query 6752 CTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCC 6811 | ||||| | |||||||||||| || ||||| | || | ||| || | | ||| | Sbjct 31006 CGAGGTGCAGGTGGAATACCCGTCAACTCAAACTTTCCTAACAAATGATTGTTCTTCGTC 30947 Query 6812 TTCTTACGTTCACCTTCATAGAC 6834 | ||||||||||| || || Sbjct 30946 ATTGGGCGTTCACCTTCGTACAC 30924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635105687768600