Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq144 129 4e-25 seq443 113 3e-20 seq743 89.7 3e-13 >seq144 Length=153386 Score = 129 bits (142), Expect = 4e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||||||||| ||||||||||| ||||| || || ||| | ||||| Sbjct 49654 ACCAGGTGGAGTGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCGTCATCA 49713 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 49714 AGCTGCTTCCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGG 49773 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || | | || | ||| | ||| ||||| | ||| |||||||| Sbjct 49774 ATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATGGTTTTA 49833 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTA 34988 ||||| || ||||||||||| || ||||| |||||| Sbjct 49834 CCCGTTAGCGTCTTCACAAAAATTTGCATCTTCGTA 49869 >seq443 Length=45324 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | || |||||||||| || ||||||||||||||||| || || Sbjct 299 CCACCTCTCAAGCGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATGTTATAATCAGAC 240 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| |||||||| || |||||||| || || || ||||| || | || Sbjct 239 AGCGTCCTCCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGA 180 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| || ||| | || | || | ||||||| Sbjct 179 ATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATAGTGTCTGATGGCTCAACA 120 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || || || || || ||||||||||||||||| ||||| Sbjct 119 TCAAGAGTGATCGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 73 >seq743 Length=20979 Score = 89.7 bits (98), Expect = 3e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884 |||| |||||||| || |||||||| || || || ||||| || | || | ||||||| Sbjct 1 CATCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCT 60 Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTA 34944 |||| |||||| || ||| | || | || | ||||||||| | || | Sbjct 61 TGTCTTGAATCTTTGCCTTTACGTTCTCGATAGTGTCTGATGGCTCAACATCTAGAGTGA 120 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || |||||||| ||||| |||||||||||||| Sbjct 121 TGGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324620088648120