Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq200 125 8e-24 >seq200 Length=58787 Score = 125 bits (138), Expect = 8e-24 Identities = 175/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGAT-TACTCGCTGATTTTGTTCGTAAATAATACATACCAGT 47035 || |||||||| ||||| | || | || |||| || ||| || || ||||| | || || Sbjct 58442 TCTACAGTAAATTTAATAGCATCTGCT-GCTGCTTGTGTGCGGAAGTAATAAAGCCCTGT 58384 Query 47036 CTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTC 47095 |||||||||| ||| |||| || ||||| ||| |||||| | || | || | Sbjct 58383 CTTTAAACCTCTTGACCAACCATGAAAGTGCATTGTAGATAATTTTGCGTATGTCGGATT 58324 Query 47096 TGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCAT 47155 ||||||||||| | |||||| ||||| | ||| | ||||||| || ||||| Sbjct 58323 AATCATATGAATATTTAACGATTGAGATTGATCTACAAACGGTGCTCTATCTGCAGCCAT 58264 Query 47156 ATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTC 47215 ||| | |||| |||||| ||||||||| ||||||||||| | || ||| || ||||| Sbjct 58263 ATCAATAATACTTCTTTGTTTTATCTCCCACACTGTTTTATATAATTCTTTTATATCTTC 58204 Query 47216 TGG 47218 || Sbjct 58203 AGG 58201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562084804980600