Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq843 275 5e-68 seq443 105 5e-17 seq743 87.8 1e-11 seq588 87.8 1e-11 seq144 86.0 5e-11 >seq843 Length=181884 Score = 275 bits (304), Expect = 5e-68 Identities = 395/550 (72%), Gaps = 15/550 (3%) Strand=Plus/Minus Query 549996 TAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTG 550055 ||||||||||| | || || |||||| ||||| ||||| ||| | || | || | Sbjct 178273 TAGGTATAGATCTCGGGACGACATATTCATGTGTAGGTGTGTGGAAGAACGACGGTGTAG 178214 Query 550056 AAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAA 550115 | ||||| || |||||||| ||||| ||||| || || ||||||||| | || || || | Sbjct 178213 AGATTATAGCGAATGATCAGGGTAATAGAACGACACCGTCTTATGTTGCATTTACAGATA 178154 Query 550116 CTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTA 550175 | || ||||| || ||||||||||| |||| | | | | || ||| |||||| Sbjct 178153 CAGAGAGGTTAGTAGGAGATGCAGCAAAGAATCAGGTCGCAAGAAACCCTGAAAATACTG 178094 Query 550176 TTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATA 550235 | |||||||||||| | ||||| ||||||| || ||||| || |||| |||||||||| Sbjct 178093 TCTTTGATGCTAAAAGATTAATCGGAAGAAAGTTCGATGATCCGGCTGTACAGGCAGATA 178034 Query 550236 TGAAGCATTGGCC-TTTCCAAATTGTTAA---TGTTTCTGGA---AAACCTTATATTGAA 550288 |||| || ||||| ||| || ||||| | | | ||| || ||| || ||| Sbjct 178033 TGAAACACTGGCCGTTTACA----GTTAAAGCAGGTCCAGGAGGCAAGCCTCTAATAGAA 177978 Query 550289 GCTACTCATGAAGGATCTGTTA-AACAATTTTCA-CCAGAACAAATTTCATCTATGGTTT 550346 | || | || |||| | | | || | ||||| || ||| | || ||| | ||||| | Sbjct 177977 GTTAATTATCAAGG--CAGCAAGAAGACCTTTCATCCTGAAGAGATATCAGCAATGGTCT 177920 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | ||||| |||||| ||| ||| || || | || ||||||||| || || || | Sbjct 177919 TGATGAAGATGAAAGAAATAGCTGAAGCATTCATAGGGAAAGAAGTTAAAGAAGCTGTTA 177860 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | |||||||| ||||||||||| ||||||||| | ||||| || |||||||| || || Sbjct 177859 TTACTGTACCTGCATATTTTAACGACTCACAAAGACAAGCAACAAAAGATGCAGGGACTA 177800 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | || ||| | ||||| | | ||||| ||||| |||||||| || || ||||||| | Sbjct 177799 TCGCAGGATTAAATGTCTTAAGAATTATTAATGAGCCTACTGCAGCAGCTATTGCATACG 177740 Query 550527 GACTTGATAA 550536 | | ||||| Sbjct 177739 GTTTAGATAA 177730 Score = 251 bits (278), Expect = 6e-61 Identities = 570/842 (68%), Gaps = 15/842 (2%) Strand=Plus/Minus Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816 ||||| ||| | ||| || |||||| ||||||| | ||| | || || ||||| Sbjct 177653 GAAGACGGTATTTTTGAGGTTAAAGCTACAGCTGGAGATACACATTTAGGAGGTGAAGAC 177594 Query 551817 TTTGATAATAGACTGGTATCATGGTGTGTTGAAGATTTTAAACGAAAAAACA-AAGTT-- 551873 |||||||||||||| ||| | || ||| ||||||| || |||| || | ||| Sbjct 177593 TTTGATAATAGACTTGTAGATTTTTGCGTTCAAGATTTCAAGAGAAAGAATAGAAGCAAA 177534 Query 551874 GATCTATCTACAT-CTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAA 551932 |||| ||| | | | || | | ||||| | || || |||||||| || Sbjct 177533 GATCCGAGCACAAACAGTCGT-GCATTAAGGCGTCTTCGTACACAATGTGAAAGAGCAAA 177475 Query 551933 ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAAT 551992 | || | | ||| | || ||| | || ||||| |||| || ||||||||||| || Sbjct 177474 AAGAACATTATCAAGCAGCACACAAGCAACAATTGAGATAGACTCTTTATTTGAGGGTAT 177415 Query 551993 TGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAG 552052 ||||||| | | | || || || |||||||| | || ||| ||| || Sbjct 177414 TGATTATTCTGTCTCCCTCTCTAGAGCTCGCTTTGAAGAACTATGCATGGATTACTTCAG 177355 Query 552053 AAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAG--ATTGATAAATCCAAA 552110 || | ||| ||| || ||| | ||| | | ||| || | ||||||||| || Sbjct 177354 GAACTCTCTTGTACCTGTTGAAAAGGTTCTGAAAGA--CAGCGGCATTGATAAACGCAGT 177297 Query 552111 GTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTC-GCGAAATGTT 552169 ||||||||| | || ||||| ||||||||||| | ||||| || || | || | | || Sbjct 177296 GTACATGAAGTAGTACTTGTCGGTGGATCTACTCGTATTCCGAAGATACAGCAACTTATT 177237 Query 552170 AAGTTCTTATTTCAATGGTAAAAAAT-TAAATGAAAGTGTTAATCCAGATGAGGCTGTTG 552228 | || |||||| ||||| | | || | |||| || ||||| ||||||| Sbjct 177236 CAAGAGTT-TTTCAACGGTAAGGAGCCTTGCCGATCGA-TTAACCCTGATGAAGCTGTTG 177179 Query 552229 CCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACA-AACTGATGAAAAACTACAA 552287 | |||||||| ||| |||||||||| || | || ||| | | || ||||| Sbjct 177178 CATATGGTGCTGCAGTTCAAGCAGCAATATTGAAGGGGGTTAACAGCAGTCAAG-TACAA 177120 Query 552288 AATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATT 552347 || | |||| |||||||| | |||||||| | ||||||||||||| || ||| | Sbjct 177119 GATCTATTACTATTAGATGTTGCACCTCTATCATTAGGTTTAGAAACAGCAGGGGGTGTA 177060 Query 552348 ATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCT 552407 ||||| || | || || |||||||| || || ||| || || |||| | || | Sbjct 177059 ATGACGAAATTGATTGAAAGAAATACAACAATACCTACAAAGAAGTCTCAGATCTTCACA 177000 Query 552408 ACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTC 552467 || ||| |||||||||| | | ||| |||||| | ||||||||||| ||| | Sbjct 176999 ACATATGCAGATAATCAGCCGGGTGTACTTATTCAAGTCTTTGAAGGAGAGAGAGCTATG 176940 Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 ||||| |||||||||| | |||| ||| ||||||| |||||||| || || || | Sbjct 176939 ACTAAGGATAATAATCTCTTAGGTAAGTTTCATTTAGACGGTATTCCGCCGGCACCGAGA 176880 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 || |||||||| || || || || |||||||| || || || || ||| ||||||| ||| Sbjct 176879 GGCGTACCGCAGATAGAGGTGACGTTCGATATTGACGCAAACGGTATTATGAATGTAACT 176820 Query 552588 GC 552589 || Sbjct 176819 GC 176818 >seq443 Length=45324 Score = 105 bits (116), Expect = 5e-17 Identities = 151/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| |||||||| ||||| ||| || ||||||| || || || |||||| | Sbjct 279 CAAG-TGAAGGGTTGACTCTTTCTGAATGTTATAATCAGACAGCGTCCTCCCATCTTCCA 221 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 | || || |||||||||||||| | |||||||||||||||||||| || || || |||| Sbjct 220 GCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGAA 161 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTA 563445 | ||| || || ||| || || || | || ||| || ||||| | || || Sbjct 160 TCTTTGCCTTCACGTTCTCGATAGTGTCTGATGGCTCAACA-TCAAGAGTGATCGTCTTG 102 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| ||||| || || || |||||||| Sbjct 101 CCAGTCAGAGTCTTCACAAAGATTTGCAT 73 >seq743 Length=20979 Score = 87.8 bits (96), Expect = 1e-11 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| || || || |||||||||||||| | |||||||||||||||||||| || || Sbjct 2 ATCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCTT 61 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAA 563437 |||||||| ||| ||||| ||| || || || | || ||| || ||||| | Sbjct 62 GTCTTGAATCTTTGCCTTTACGTTCTCGATAGTGTCTGATGGCTCAACA-TCTAGAGTGA 120 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || || || || || || ||||| Sbjct 121 TGGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 157 >seq588 Length=32108 Score = 87.8 bits (96), Expect = 1e-11 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 930664 TTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCA 930723 ||||||| ||||| || ||| |||| || || |||||| | |||||||||||||| || | Sbjct 21681 TTGATTTCTCTTCGCCGAATGTTGCGAAGGAGATGCATGTAGGACATTTGCGTTCAACTA 21622 Query 930724 TTATTGGAGAATCTTTATGTA 930744 | |||||||| |||||||||| Sbjct 21621 TAATTGGAGAGTCTTTATGTA 21601 >seq144 Length=153386 Score = 86.0 bits (94), Expect = 5e-11 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 563265 TACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324 ||| || || || || ||||| || ||| ||||| || | |||||||| || || Sbjct 49653 TACCAGGTGGAGTGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCGTCATC 49712 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 ||| || || || ||||| ||||| | ||||| ||||||||||| || || || || || Sbjct 49713 AAGCTGCTTCCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 49772 Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTT 563443 || ||| || || || || || |||| | | || || || |||| |||| Sbjct 49773 GATCTTTGCCTTCACATTTTCGATAGTGTCAG-AAGGCTCCACATCAAGGGTAATGGTTT 49831 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || || || || ||||||||||| Sbjct 49832 TACCCGTTAGCGTCTTCACAAAAATTTGCAT 49862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029115399398350