Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq843 226 2e-53 seq144 131 1e-24 seq443 118 7e-21 seq743 104 2e-16 >seq843 Length=181884 Score = 226 bits (250), Expect = 2e-53 Identities = 583/866 (67%), Gaps = 19/866 (2%) Strand=Plus/Minus Query 475318 TGACGTAACTTTACTATCACTCGAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGA 475377 ||| ||| ||||| || || | ||||| ||| |||| || | ||| ||||||||||| Sbjct 177675 TGATGTATCTTTATTAACAATTGAAGACGGTATTTTTGAGGTTAAAGCTACAGCTGGAGA 177616 Query 475378 TTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGTATCATGGTGTGTTGAAGATTT 475437 | ||||| | || |||||||| |||||||||||||||||| | || ||| ||||||| Sbjct 177615 TACACATTTAGGAGGTGAAGACTTTGATAATAGACTTGTAGATTTTTGCGTTCAAGATTT 177556 Query 475438 CAAGAGGAAAAATA-AAGTT--GATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAG 475494 |||||| || |||| ||| |||| ||| | |||||||| |||||| | Sbjct 177555 CAAGAGAAAGAATAGAAGCAAAGATCCGAGCACAAACAGTCGTGCATTAAGGCGTCTTCG 177496 Query 475495 AACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTT-CTGCTACTCAAACTACTGTTGAAG 475553 || |||||| | || || || | | || | || || ||| | || |||| Sbjct 177495 TACACAATGTGAAAGAGCAAAAAGAACATTATCAAGCAGC-ACACAAGCAACAATTGAGA 177437 Query 475554 TTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTA-CAAGGGCTAAATTTGAA 475612 | || ||| | ||||| || ||||||||| | ||| | | || ||| |||||| Sbjct 177436 TAGACTCTTTATTTGAGGGTATTGATTATTCTG-TCTCCCTCTCTAGAGCTCGCTTTGAA 177378 Query 475613 GATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGAT 475672 || | || ||| ||| || || | ||| ||| |||||| | ||||| | ||| Sbjct 177377 GAACTATGCATGGATTACTTCAGGAACTCTCTTGTACCTGTTGAAAAGGTTCTGAAAGAC 177318 Query 475673 TCTAAACTTGACAAATCACAA-GTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAAT 475731 |||| ||| | || || |||||| | || ||||| || || || || | || Sbjct 177317 AGCGGCATTGATAAA-CGCAGTGTACATGAAGTAGTACTTGTCGGTGGATCTACTCGTAT 177259 Query 475732 TCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAAGT-TAAATGAAAGT 475789 ||| || ||| || || |||| | |||| || ||||| || | || | Sbjct 177258 TCCGAAGATAC-AGCAACTTATTCAAGAGTTTTTCAACGGTAAGGAGCCTTGCCGATCGA 177200 Query 475790 GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGC--TATTTTATCAG 475847 ||| ||||||||||||||||||||||| ||||| || |||||||| |||| | | Sbjct 177199 TTAAC-CCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCAATATTGAAGGGG 177141 Query 475848 GTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAG 475907 || || ||| | || || | || | |||| | || || | || || ||||||| Sbjct 177140 GTTAA-CAG-CAGTCAAGTACAAGATCTATTACTATTAGATGTTGCACCTCTATCATTAG 177083 Query 475908 GTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCAT 475967 || | ||||||| || || | ||||| || | ||||| |||||||| | || || | Sbjct 177082 GTTTAGAAACAGCAGGGGGTGTAATGACGAAATTGATTGAAAGAAATACAACAATACC-T 177024 Query 475968 GCAAA-AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAA 476026 |||| || || | | || | || ||| | |||||||| | |||| || ||| Sbjct 177023 ACAAAGAAGTCTCAGATCTTCACAACATATGCAGATAATCAGCCGGGTGTACTTATTCAA 176964 Query 476027 ATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTT 476086 |||||||||| || ||| | ||||| |||||||| | || | ||| || | Sbjct 176963 GTCTTTGAAGGAGAGAGAGCTATGACTAAGGATAATAATCTCTTAGGTAAGTTTCATTTA 176904 Query 476087 GAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGAT 476146 || |||||||| || || || ||||| || || || || || || || || |||||||| Sbjct 176903 GACGGTATTCCGCCGGCACCGAGAGGCGTACCGCAGATAGAGGTGACGTTCGATATTGAC 176844 Query 476147 GCAAATGGTATTCTTAATGTTACTGC 476172 ||||| |||||| | ||||| ||||| Sbjct 176843 GCAAACGGTATTATGAATGTAACTGC 176818 Score = 201 bits (222), Expect = 7e-46 Identities = 386/558 (69%), Gaps = 17/558 (3%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | ||||| ||| | || || || || ||||||| ||| ||| | || | Sbjct 178277 GCAGTAGGTATAGATCTCGGGACGACATATTCATGTGTAGGTGTGTGGAAGAACGACGGT 178218 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 ||||| || || || ||||| || ||||||||||| ||||| || |||||| | ||||| Sbjct 178217 GTAGAGATTATAGCGAATGATCAGGGTAATAGAACGACACCGTCTTATGTTGCATTTACA 178158 Query 474449 GAAACTGAACATCTTATT-GGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || || || | ||| | |||||||| || || |||| | ||| || |||| || Sbjct 178157 GATACAGAG-AGGTTAGTAGGAGATGCAGCAAAGAATCAGGTCGCAAGAAACCCTGAAAA 178099 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 |||| | ||||||||||||||||| || || | || || |||||| | |||| || | Sbjct 178098 TACTGTCTTTGATGCTAAAAGATTAATCGGAAGAAAGTTCGATGATCCGGCTGTACAGGC 178039 Query 474568 TGATATGCGTCATTGGCCTTTTA-AGGTGATAAATGT--TGGTGGTAAACCATATATAGA 474624 |||||| || ||||| |||| || | | | || || || || || ||||| Sbjct 178038 AGATATGAAACACTGGCCGTTTACAGTTAAAGCAGGTCCAGGAGGCAAGCCTCTAATAGA 177979 Query 474625 AG-CAATACACGCAGGTGAAACTAAACAATTTTCA-CCGGAACAAATTTCTTCAATGGTT 474682 || ||| | | | || || | ||||| || ||| | || || ||||||| Sbjct 177978 AGTTAATTATCAAGGCAGCAA--GAAGACCTTTCATCCTGAAGAGATATCAGCAATGGTC 177921 Query 474683 TTAGCCAAAATGAAACAAACCGC--GAGC--TCATATCTTGGACAAGAAGTAACTGATGC 474738 || || |||||| ||| || ||| ||||| || ||||||| | || || Sbjct 177920 TTGATGAAGATGAAAGAAATAGCTGAAGCATTCATA----GGGAAAGAAGTTAAAGAAGC 177865 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || |||||||| || ||||||||||| || || ||| | |||||||| |||||||| || Sbjct 177864 TGTTATTACTGTACCTGCATATTTTAACGACTCACAAAGACAAGCAACAAAAGATGCAGG 177805 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | || ||||| | ||||| ||| | ||||||||||| || || ||||| || |||| Sbjct 177804 GACTATCGCAGGATTAAATGTCTTAAGAATTATTAATGAGCCTACTGCAGCAGCTATTGC 177745 Query 474859 TTATGGTCTTGATAAGAA 474876 || ||| | |||||||| Sbjct 177744 ATACGGTTTAGATAAGAA 177727 >seq144 Length=153386 Score = 131 bits (144), Expect = 1e-24 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 480563 TACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTC 480622 ||| || || ||||| ||||| || || || || || | ||||||||| || || Sbjct 49653 TACCAGGTGGAGTGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCGTCATC 49712 Query 480623 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTG 480682 ||| ||||| |||||||| ||||| || || || ||||||||||| || |||||||| || Sbjct 49713 AAGCTGCTTCCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 49772 Query 480683 AATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTT 480742 |||||| || ||| ||| ||||| |||| | ||||||||||| ||||| Sbjct 49773 GATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATGGTTTT 49832 Query 480743 ACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || ||||| || |||||||| Sbjct 49833 ACCCGTTAGCGTCTTCACAAAAATTTG 49859 >seq443 Length=45324 Score = 118 bits (130), Expect = 7e-21 Identities = 134/177 (76%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 |||||||||| || || || |||||| || ||||| || |||||||||||||| || Sbjct 251 TTATAATCAGACAGCGTCCTCCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGC 192 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||||||||||||||| |||||||| ||||||||| || || || ||||| || Sbjct 191 TGATCAGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATAGTGTCT 132 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | || ||||| || || || || || || |||||||| || || ||||| Sbjct 131 GATGGCTCAA-CATCAAGAGTGATCGTCTTGCCAGTCAGAGTCTTCACAAAGATTTG 76 >seq743 Length=20979 Score = 104 bits (114), Expect = 2e-16 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| || |||||||||||||| || ||||||||||||||||| ||||| Sbjct 2 ATCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCTT 61 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||||||||||||| || || || ||||| || | || | || || || || | Sbjct 62 GTCTTGAATCTTTGCCTTTACGTTCTCGATAGTGTCTGATGGCTCAA-CATCTAGAGTGA 120 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || ||||| ||||| || || || || Sbjct 121 TGGTCTTCCCCGTGAGGGTCTTGACAAAGATCTG 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268032714080420