Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq843 464 8e-126 seq443 179 5e-40 seq3076 170 3e-37 seq743 149 8e-31 seq333 86.0 8e-12 >seq843 Length=181884 Score = 464 bits (514), Expect = 8e-126 Identities = 988/1461 (68%), Gaps = 17/1461 (1%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 ||||| ||| | || || || || |||||||| ||||| ||| | || || |||||||| Sbjct 178271 GGTATAGATCTCGGGACGACATATTCATGTGTAGGTGTGTGGAAGAACGACGGTGTAGAG 178212 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 ||||| ||||||| || || || | || || || || || ||||| |||||||||| Sbjct 178211 ATTATAGCGAATGATCAGGGTAATAGAACGACACCGTCTTATGTTGCATTTACAGATACA 178152 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || | | || |||||||| ||||| |||||| || | |||||| ||||||||| Sbjct 178151 GAGAGGTTAGTAGGAGATGCAGCAAAGAATCAGGTCGCAAGAAACCCTGAAAATACTGTC 178092 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 ||||| || || | | || || | ||||| ||| | || || | ||||| Sbjct 178091 TTTGATGCTAAAAGATTAATCGGAAGAAAGTTCGATGATCCGGCTGTACAGGCAGATATG 178032 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAA 195604 || ||||| | | | |||| | ||| | | |||||| | || | ||| | Sbjct 178031 AAACACTGGCCGTTTACAGTTAAAGCAGGTCCAGGAGGCAAGCCTCTAATAGAAGTTAAT 177972 Query 195605 TTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAG 195664 | ||| || ||||| ||| ||| ||||| || || | ||||| ||||| ||| Sbjct 177971 TATCAAGGCAGCAAGAAGACCTTTCATCCTGAAGAGATATCAGCAATGGTCTTGATGAAG 177912 Query 195665 ATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTA 195724 ||||| || | || ||| | ||||| || ||| || ||||| || ||| | |||||| Sbjct 177911 ATGAAAGAAATAGCTGAAGCATTCATAGGGAAAGAAGTTAAAGAAGCTGTTATTACTGTA 177852 Query 195725 CCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGT 195784 ||||| || || | || |||||| |||| || ||||| || || | |||| || || Sbjct 177851 CCTGCATATTTTAACGACTCACAAAGACAAGCAACAAAAGATGCAGGGACTATCGCAGGA 177792 Query 195785 CTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843 |||| ||||||| ||||||| ||||| || || || || || ||||| || ||| | || Sbjct 177791 TTAAA-TGTCTTAAGAATTATTAATGAGCCTACTGCAGCAGCTATTGCATACGGTTTAGA 177733 Query 195844 CAAGAACAAGGAC--GAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 ||||| ||||| | || | ||||| | ||||||||| | || || ||||| ||| Sbjct 177732 TAAGAA--AGGACACGGGGAGATGAATGTGCTTATCTTTGATATGGGAGGGGGTACCTTT 177675 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||||| || | | | ||||||| ||||| || || || || ||||| ||||| ||| Sbjct 177674 GATGTATCTTTATTAACAATTGAAGACGGTATTTTTGAGGTTAAAGCTACAGCTGGAGAT 177615 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTC 196021 || ||| |||| |||||||| || ||| | ||| | | || | | || ||| Sbjct 177614 ACACATTTAGGAGGTGAAGACTTTGATAATAGACTTGTAGATTTTTGCGTTCAAGATTTC 177555 Query 196022 CGTCGAAAGAATA--AG-AAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGG 196078 ||||||||| || |||||| ||| | | || | | || ||| | Sbjct 177554 AAGAGAAAGAATAGAAGCAAAGATCCGAGCACAAACAGTCGTGCATTAAGGCGTCTTCGT 177495 Query 196079 ACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATT 196138 || ||||||| | || ||| |||| | || | | ||| ||| ||||||| Sbjct 177494 ACACAATGTGAAAGAGCAAAAAGAACATTATCAAGCAGCACACAAGCAACAATTGAGATA 177435 Query 196139 GATTCGTTGTTTGACGGAATTGACT--TCTATACAACTATTACCCGTGCACGTTTTGAAG 196196 || || || ||||| || ||||| | ||| | || | | | || || ||||||| Sbjct 177434 GACTCTTTATTTGAGGGTATTGATTATTCTGTCTCCCTCT--CTAGAGCTCGCTTTGAAG 177377 Query 196197 AGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACG 196256 | || | |||| || ||||| | | | | |||||||||| | || || ||| Sbjct 177376 AACTATGCATGGATTACTTCAGGAACTCTCTTGTACCTGTTGAAAAGGTTCTGAAAGACA 177317 Query 196257 CAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTC 196316 || ||||| | || ||||| | || ||||| || ||||| || ||||||| Sbjct 177316 GCGGCATTGATAAACGCAGTGTACATGAAGTAGTACTTGTCGGTGGATCTACTCGTATTC 177257 Query 196317 CGAAGATTCAACAGATGCTTTCTAGC-TTCTTCAATAATAAAGATTTAAACAAAACGATC 196375 ||||||| || || | || | || || ||||| ||| || | | |||| Sbjct 177256 CGAAGATACAGCAACTTATT-CAAGAGTTTTTCAACGGTAAGGAGCCTTGCCGATCGATT 177198 Query 196376 AACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTT 196435 ||||| |||||||| ||||| |||||||| || ||||| || || || | || ||| Sbjct 177197 AACCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCAATATTGAAGGGGGTT 177138 Query 196436 GACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTT 196495 ||| | | | || |||||||| | ||| | ||||||||||| |||| | ||| | Sbjct 177137 AACAGCAGTCAAGTACAAGATCTATTACTATTAGATGTTGCACCTCTATCATTAGGTTTA 177078 Query 196496 GAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAG 196555 |||||||| || ||||| ||||| ||| | ||||| || || ||||| || || || ||| Sbjct 177077 GAAACAGCAGGGGGTGTAATGACGAAATTGATTGAAAGAAATACAACAATACCTACAAAG 177018 Query 196556 AAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATAT 196615 ||| || |||| |||| ||| | |||||||| || ||||| | ||||||||| | | Sbjct 177017 AAGTCTCAGATCTTCACAACATATGCAGATAATCAGCCGGGTGTACTTATTCAAGTCTTT 176958 Query 196616 GAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG-AACTTTCGATTTGACGGG 196674 |||||||| | | | |||||||| |||| | || || |||| || ||| || Sbjct 176957 GAAGGAGAGAGAGCTATGACTAAGGATAATAATCTCTTAGGTAAGTTTCATTTAGAC-GG 176899 Query 196675 GATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAA 196734 ||||| | ||||| ||||| || || ||||| | || |||||||| |||||||| Sbjct 176898 TATTCCGCCGGCACCGAGAGGCGTACCGCAGATAGAGGTGACGTTCGATATTGACGCAAA 176839 Query 196735 TGGAATTCTAAACGTCACAGC 196755 || ||| | || || || || Sbjct 176838 CGGTATTATGAATGTAACTGC 176818 >seq443 Length=45324 Score = 179 bits (198), Expect = 5e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||||||||| || || ||||| || || ||||| || || |||||| | ||| Sbjct 73 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACGATCACTCTTGATGTTGAGCCATCA 132 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || || |||||||| || ||||| || ||||| || |||||| Sbjct 133 GACACTATCGAGAACGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCAG 192 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || ||||||||||| || || ||||| |||||||| | || || ||||||| ||| Sbjct 193 CAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGGAGGACGCTGTCTGATTATAAC 252 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| || ||||| || || ||| | || || Sbjct 253 ATTCAGAAAGAGTCAACCCTTCACTTGGTGCT 284 >seq3076 Length=33010 Score = 170 bits (188), Expect = 3e-37 Identities = 441/662 (67%), Gaps = 19/662 (3%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGG--TGTATGGCAAAATGATCGTG 195359 || ||||| || | ||||| || ||||| || ||||| ||||| | | | | || | Sbjct 28981 ATCGGTATTGACCTGGGAACGACATACTCCTGCGTTGGGGTGTATAG--ACAGGGCCGCG 29038 Query 195360 TAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAG 195419 | || || || ||||||||||| |||||||||| || || || ||| | ||| | | Sbjct 29039 TCGACATCATTCCGAATGACCAGGGAAACCGTATTACCCCCAGTTATGTTTCTTTTGCTG 29098 Query 195420 ATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATA 195479 || |||| || | | | || || || ||||| ||| || |||||| ||||||| ||| | Sbjct 29099 ATGATGAGCGCCGCATCGGTGAAGCTGCAAAGAATGAGGCAGCTAACAACCCTACCAACA 29158 Query 195480 CTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACG 195539 | ||||||| | ||| | | || |||||| | | || || |||| | ||| | Sbjct 29159 CGATCTTTGATGTTAAGAGGTTGATCGGTCGCCGCTATAACGAGAAAGAAGTAC-AGA-G 29216 Query 195540 ATATAAAGGACTGGT--CTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAA 195597 | |||| | || | | ||| | || || | || || |||||| ||| Sbjct 29217 AGATAAGGAGTTGCTTCCCTATTCAATTATT---AATAAGGATGGGAAGCCTTATATTCG 29273 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657 |||| || | || || ||| | | || || || ||| |||| | |||||||| Sbjct 29274 TGTTATGGTTAAGGGACAGCCGAAGGAGCTGGCGCCTGAGGAAGTTTCTGCAATGGTGTT 29333 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | ||| ||||| || ||| || | | | |||||| || || ||||||| || Sbjct 29334 GGGTAAAATGAAAGAAGTTGCAGAGAACTACCTCGGTAAAGAAGTCAAGAATGCAGTCGT 29393 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || || || ||||||| ||| |||| || || || |||||||| || | || || Sbjct 29394 TACCGTGCCCGCATACTTCAACGATGCACAGCGCCAAGCTACAAAGGATGCAGGAGCAAT 29453 Query 195778 TGCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 ||| ||| | || |||| || | || ||||| ||||| || || || || ||||| |||| Sbjct 29454 TGCAGGTTTGAA-TGTCATTCGTATCATCAACGAACCCACTGCCGCAGCTATTGCATATG 29512 Query 195837 GTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTA 195896 | || |||||| || |||||| || | | | | ||| ||||| ||||| |||| Sbjct 29513 GGCTCGACAAG---AAAGACGAA---AAGACTATTCTTGTCTACGATCTTGGTGGAGGTA 29566 Query 195897 CGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTG 195956 | ||||| || ||| | || ||| || || | |||||||| | || ||| | | Sbjct 29567 CCTTTGACGTTTCAGTGCTTGTTATCGACAACGGCGTCTTCGAAGTGCACGCGACTTCAG 29626 Query 195957 GT 195958 || Sbjct 29627 GT 29628 Score = 150 bits (166), Expect = 2e-31 Identities = 289/424 (68%), Gaps = 13/424 (3%) Strand=Plus/Plus Query 196190 TTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT 196249 |||||||| || || | |||||||| |||| | || |||| || | ||||| | Sbjct 30192 TTTGAAGAATTGAATGCAGATTTGTTCCAGAAGACTTTGAAACCAGTCAAGCAAGTGTTG 30251 Query 196250 CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309 || || | || | |||||| || |||| |||||||| | ||||| || || || Sbjct 30252 GAAGATGCTGATCTGAAGAAGTCTCAGATTGACGAAATTGTGTTGGTGGGTGGCTCTACT 30311 Query 196310 CGTATTCCGAAGATTCAACAGATGCTTTCTAGC--TTCTTCAATAATAAAGATTTAAACA 196367 |||||||| |||||||| ||| | | || || |||||||| || || |||| Sbjct 30312 CGTATTCCTAAGATTCAGCAGCT--TATCAAGGAGTTCTTCAACGGAAAGGAACCCAACA 30369 Query 196368 AAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCT 196427 | |||||||| || ||||| || ||||||||||| || |||||||| | |||||| | Sbjct 30370 GAGGCATCAACCCCGACGAAGCCGTCGCTTATGGTGCAGCAGTTCAGGCGGGTATTCTTT 30429 Query 196428 CAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCC 196487 | || | | ||| |||||| | | | || || ||| | ||| | | | Sbjct 30430 CTGG-------AGAAGGAAC--CCAAGACATGGTTTTGCTCGACGTTACTCCCCTCACTC 30480 Query 196488 TGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTC 196547 | ||| |||| || || |||||||| ||| ||||| |||| | | |||||| |||| Sbjct 30481 TCGGTATTGAGACTGCAGGTGGTGTGATGGCTAAAGTTATCAACAAGAACACCGTCATTC 30540 Query 196548 CGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTC 196607 | || |||||| |||| ||| || || || || || || ||| | | ||| | ||||| Sbjct 30541 CCACCAAGAAGACACAAACCTTCTCTACATACTCTGACAACCAATCGGCTGTCCTTATTC 30600 Query 196608 AAGT 196611 | || Sbjct 30601 AGGT 30604 >seq743 Length=20979 Score = 149 bits (164), Expect = 8e-31 Identities = 127/157 (81%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| || || || || ||||| || || |||||| | ||| Sbjct 157 ATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACCATCACTCTAGATGTTGAGCCATCA 98 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || || ||||||||||| ||||| || ||||| || |||||| Sbjct 97 GACACTATCGAGAACGTAAAGGCAAAGATTCAAGACAAGGAGGGAATTCCTCCTGATCAG 38 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATG 172018 || || ||||||||||| || || ||||| ||||||| Sbjct 37 CAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAAGATG 1 >seq333 Length=50985 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/73 (89%), Gaps = 3/73 (4%) Strand=Plus/Plus Query 167230 GAGTGGGGTTTGAACCCACGAGA-CTTGCG-TCAGCGGGTCTTAAGTCCGCCCCCTTAGA 167287 |||||||||| ||||||||| || ||| || |||| || ||||||||||||||||||| | Sbjct 41514 GAGTGGGGTTCGAACCCACGCGATCTTTCGATCAGGGGATCTTAAGTCCGCCCCCTTA-A 41572 Query 167288 CCACTCGGGCATC 167300 ||||||||||||| Sbjct 41573 CCACTCGGGCATC 41585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657834317498800