Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq443 113 8e-20 seq743 95.1 2e-14 >seq443 Length=45324 Score = 113 bits (124), Expect = 8e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||||||| || || |||| || | || | |||||| ||| ||||| || || Sbjct 299 CCACCTCTCAAGCGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATGTTATAATCAGAC 240 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||| || ||| || | || || ||||||||||| | | ||| ||||||||||| Sbjct 239 AGCGTCCTCCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGA 180 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||| || || || || || || | || | || ||||| || || | |||||| Sbjct 179 ATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATAGTGTCTGATGGCTCAACA 120 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || || || || || ||||| |||||||| Sbjct 119 TCAAGAGTGATCGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 73 >seq743 Length=20979 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||||||||| | | ||| ||||||||||| ||||| || || ||||| || Sbjct 12 TGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCTTGAATC 71 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | |||| || ||||| || || | |||||| |||||||| || || || || Sbjct 72 TTTGCCTTTACGTTCTCGATAGTGTCTGATGGCTCAACATCTAGAGTGATGGTCTTCCCC 131 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || ||||| || |||||| Sbjct 132 GTGAGGGTCTTGACAAAGATCTGCATT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899615996002800