Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq843 551 4e-151 seq3076 111 1e-18 >seq843 Length=181884 Score = 551 bits (610), Expect = 4e-151 Identities = 1022/1473 (69%), Gaps = 44/1473 (3%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||||| ||||| | |||||| || || || | ||| || || || || || || || || Sbjct 176818 GCAGTTACATTCATAATACCGTTTGCGTCAATATCGAACGTCACCTCTATCTGCGGTACG 176877 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 |||||| | || || || || || || |||| ||| | || | ||||||||| ||| Sbjct 176878 CCTCTCGGTGCCGGCGGAATACCGTCTAAATGAAACTTACCTAAGAGATTATTATCCTTA 176937 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | || || || || || | ||| ||| || | | |||||||||| ||| Sbjct 176938 GTCATAGCTCTCTCTCCTTCAAAGACTTGAATAAGTACACCCGGCTGATTATCTGCATAT 176997 Query 281606 GTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 ||||| || | |||| || || || ||| |||||||| ||||| ||||| | || || Sbjct 176998 GTTGTGAAGA-TCTGAGACTTCTTTGTAGGTATTGTTGTATTTCTTTCAATCAATTTCGT 177056 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | ||| || |||||||||||||| | || ||||| | ||||| | ||| | | Sbjct 177057 CATTACACCCCCTGCTGTTTCTAAACCTAATGATAGAGGTGCAACATCTAATAGTAATAG 177116 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATA--GCTGCTTGAATAGCAGCACCA 281782 || ||| | || | | ||| ||| | |||| |||||||||| ||||||||| Sbjct 177117 ATCTTGTACTTGA-CTGCTGTTA-ACCCCCTTCAATATTGCTGCTTGAACTGCAGCACCA 177174 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 |||||||||||||||||||| |||| | | | | ||||| |||||||| | | Sbjct 177175 TATGCAACAGCTTCATCAGGGTTAATCGATCGGCAAGGCTCCTTACCGTTGAAAAACTCT 177234 Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902 || |||||| || ||| |||||||||| ||||| || || | ||| | |||||| Sbjct 177235 TGAATAAGTTGCTGTATCTTCGGAATACGAGTAGATCCACCGACAAGTACTACTTCATGT 177294 Query 281903 AC-CTGTGATTTATCCA----GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGAC 281957 || ||| | |||||| | | | | || | ||| |||||||| ||| ||||| Sbjct 177295 ACACTGCG-TTTATCAATGCCGCTGTCTTTC----AGAACCTTTTCAACAGGTACAAGAG 177349 Query 281958 CAGCTC-TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 282016 || || | || | || || |||||||| || |||||||| || | |||| | Sbjct 177350 -AGTTCCTGAAGTAATCCATGCATAGTTCTTCAAAGCGAGCTCTAGAGAGGGAGACAGAA 177408 Query 282017 TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGT 282076 |||||||| || || || ||||| || | ||||| || | ||| || |||| | Sbjct 177409 TAATCAATACCCTCAAATAAAGAGTCTATCTCAATTGTTGCTTGTGTGCTGCTTGATAAT 177468 Query 282077 GCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT-T 282135 | | ||| || | ||||||| ||| | || | | ||| || ||| ||| | Sbjct 177469 GTTCTTTTTGCTCTTTCACATTGTGTACGAAGACGCCTTAATGCACGA-CTGTTTGTGCT 177527 Query 282136 CAAATCTGTT-TTATATT--TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 282192 | |||| | || |||| ||||||||||||||| ||| || | |||||| | ||| Sbjct 177528 CGGATCTTTGCTTCTATTCTTTCTCTTGAAATCTTGAACGCAAAAATCTACAAGTCTATT 177587 Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 |||||| ||||||||||| || | |||| ||| | |||||| | || | |||| || Sbjct 177588 ATCAAAGTCTTCACCTCCTAAATGTGTATCTCCAGCTGTAGCTTTAACCTCAAAAATACC 177647 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 ||||||| | || | || |||||| ||| || || ||||||||||| ||||| || Sbjct 177648 GTCTTCAATTGTTAATAAAGATACATCAAAGGTACCCCCTCCCATATCAAAGATAAGCAC 177707 Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 |||||| || || | || ||||| | ||| || |||| ||| || ||||| || || Sbjct 177708 ATTCATCTCCCCGTGTCCTTTCTTATCTAAACCGTATGCAATAGCTGCTGCAGTAGGCTC 177767 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 |||||||||||| || ||||| | || || || | ||||||||||| || |||||||| Sbjct 177768 ATTAATAATTCTTAAGACATTTAATCCTGCGATAGTCCCTGCATCTTTTGTTGCTTGTCT 177827 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAAT 282492 |||||| ||||||||||||||||| ||||||||||| || ||| | |||||||| || | Sbjct 177828 TTGTGAGTCGTTAAAATATGCAGGTACAGTAATAACAGCTTCTTTAACTTCTTTCCC--T 177885 Query 282493 ATAAGCGCTT--GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550 || | |||| ||| ||| |||||| || | || | ||||| ||| || | ||| ||| Sbjct 177886 ATGAATGCTTCAGCTATTTCTTTCATCTTCATCAAGACCATTGCTGATATCTCTTCAGGA 177945 Query 282551 -GAA---TATTGCTTGGATTCATTTTGATATGATACTTC-AAAATATGGTTTATT----- 282600 ||| | || ||| | | | |||||| ||||| | | | | || | Sbjct 177946 TGAAAGGTCTT-CTT-GCTGC--CTTGATAATTAACTTCTATTAGAGGCTTGCCTCCTGG 178001 Query 282601 ACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATT 282660 ||| | | ||||| |||| ||||| | ||||||||||| || ||| | |||| Sbjct 178002 ACCTGCTT---TAACTGTAAACGGCCAGTGTTTCATATCTGCCTGTACAGCCGGATCATC 178058 Query 282661 AAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGC 282720 || | ||| || ||||||| ||| |||||||| | |||||| || || ||| | Sbjct 178059 GAACTTTCTTCCGATTAATCTTTTAGCATCAAAGACAGTATTTTCAGGGTTTCTTGCGAC 178118 Query 282721 TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGG 282780 |||| || ||||||||||| | | ||||| |||||||||| |||||| || || Sbjct 178119 CTGATTCTTTGCTGCATCTCCTACTAACCTCTCTGTATCTGTAAATGCAACATAAGACGG 178178 Query 282781 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 282840 || || | |||||| ||||||||||| ||||| || || | || | ||| ||||| Sbjct 178179 TGTCGTTCTATTACCCTGATCATTCGCTATAATCTCTACACCGTCGTTCTTCCACACACC 178238 Query 282841 TACACAACTAAAAGTTGTTCCTAAATCAATACC 282873 |||||| | | || || || | ||| ||||| Sbjct 178239 TACACATGAATATGTCGTCCCGAGATCTATACC 178271 Score = 127 bits (140), Expect = 2e-23 Identities = 115/142 (81%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATT-TTAAGAACATCTAAA 86172 ||||||||||||||| |||||||||||| || |||||||| ||| ||||| |||| ||| Sbjct 177734 CTAAACCGTATGCAATAGCTGCTGCAGTAGGCTCATTAATAATTCTTAAG-ACATTTAAT 177792 Query 86173 CCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGT 86232 || || || | | | ||| ||||||||||| |||| ||| ||||||||||| ||| Sbjct 177793 CCTGCGATAGTCCCTGCATCTTTTGTTGCTTGTCTTTGTGAGTCGTTAAAATATGCAGGT 177852 Query 86233 ACAGTAATAACTGCTTTATTAA 86254 ||||||||||| |||| |||| Sbjct 177853 ACAGTAATAACAGCTTCTTTAA 177874 >seq3076 Length=33010 Score = 111 bits (122), Expect = 1e-18 Identities = 189/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 ||| ||| ||| || ||||| | ||| | | ||| | | || |||| ||||| | Sbjct 29577 AACGTCAAAGGTACCTCCACCAAGATCGTAGACAAGAATAGTCTTTTC---GTCTT---T 29524 Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 || || || ||||| |||| ||| || ||||| ||||| || || || | | ||||| Sbjct 29523 CTTGTCGAGCCCATATGCAATAGCTGCGGCAGTGGGTTCGTTGATGATACGAATGACATT 29464 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 | ||| |||||| ||||||||| || || ||||| | |||| |||||| || ||||| Sbjct 29463 CAAACCTGCAATTGCTCCTGCATCCTTTGTAGCTTGGCGCTGTGCATCGTTGAAGTATGC 29404 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCT-TGCTGTTTGTT 282512 || || |||| || |||| | |||||||| || | || | || ||| || || Sbjct 29403 GGGCACGGTAACGACTGCATTCTTGACTTCTTTACCGAGGTA-GTTCTCTGCAACTTCTT 29345 Query 282513 TCATTTTACTTAAAATCATTGATGAAATTT 282542 ||||||||| || | ||||| |||| || Sbjct 29344 TCATTTTACCCAACACCATTGCAGAAACTT 29315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740462737931790