Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq443 161 2e-34 seq144 122 2e-22 seq743 107 4e-18 seq563 96.9 7e-15 >seq443 Length=45324 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||||||| ||||| || ||||| || || || |||||||| || ||||||||||| Sbjct 299 CCACCTCTCAAGCGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATGTTATAATCAGAC 240 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || || ||||| || || || || ||||| || || | || ||||| ||||| Sbjct 239 AGCGTCCTCCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGA 180 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || ||||||||||| || || || || || || || || || || Sbjct 179 ATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATAGTGTCTGATGGCTCAACA 120 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| ||||||||||| |||| ||||| ||||| || ||||| Sbjct 119 TCAAGAGTGATCGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 73 >seq144 Length=153386 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 82619 TTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 82678 ||| ||||| || || || || || ||| |||| ||||| || || || || |||||||| Sbjct 49671 TTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCGTCATCAAGCTGCTTCCCAGCAAA 49730 Query 82679 GATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 ||| || | || || || ||||| || || ||||| || || |||||||| || ||||| Sbjct 49731 GATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTTGCCTTCACATT 49790 Query 82739 TTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 ||| || || ||| ||| || || || | || || || || || || | |||||| || Sbjct 49791 TTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATGGTTTTACCCGTTAGCGTCTTCAC 49850 Query 82799 AAATATCTGCAT 82810 ||| || ||||| Sbjct 49851 AAAAATTTGCAT 49862 >seq743 Length=20979 Score = 107 bits (118), Expect = 4e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || ||||| || || | || ||||| ||||| ||||| ||||| Sbjct 3 TCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCTTG 62 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||||||||| ||||| || || || || || || || || || | ||| || Sbjct 63 TCTTGAATCTTTGCCTTTACGTTCTCGATAGTGTCTGATGGCTCAACATCTAGAGTGATG 122 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 ||||| || || | ||||| ||||| ||||||||| || Sbjct 123 GTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCATTGTT 161 >seq563 Length=35025 Score = 96.9 bits (106), Expect = 7e-15 Identities = 211/310 (68%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 198291 TATATCTATTCTATTAAACAACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCA 198350 ||||| |||||| | ||| || | || | || | |||||||| |||| |||||| || Sbjct 24218 TATATATATTCTTTGAAAGAATTAAAAGAAGCAAAGACACATGATGCTCTCTGGAATACA 24159 Query 198351 TCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCT 198410 | ||| |||| | | | |||| |||||| | | || ||| | |||||||||| Sbjct 24158 GCTCAATTACAACTCGTTAATGAAGCTAAAATGAACGGGTTCTTACGCATGTACTGGGTA 24099 Query 198411 AAAAAGATACTTGAATGGACAAGAACACCGGA-AGAC-GCTTTGAGTTATAGTATCTATC 198468 || || || | || ||| || | | | |||| ||| | | ||| || ||| Sbjct 24098 AAGAAAATCTTAGAGTGGC--AGCTGTCTGCAGAGACAGCTCTAAAGTATTCAATTTATT 24041 Query 198469 TAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGT 198528 | || |||| | | | ||||||| || || ||||| ||||| || || ||| | ||| Sbjct 24040 TTAATGATAAATTCTCATTAGACGGAACAGACCCTAATGGATATGTCGGCTGTCTCTGGG 23981 Query 198529 CTATTTGCGGAT-TACATGATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGA 198587 | || || | | | |||||| || ||||| || ||| ||||| || ||||||||| Sbjct 23980 GT-TTAGCTGGTCTTCATGATACGGCTTGGAAGGAGAGAGAAATATTCGGCAAGATAAGA 23922 Query 198588 TATATGAATT 198597 |||||||||| Sbjct 23921 TATATGAATT 23912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981784240457685