Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq563 105 1e-17 >seq563 Length=35025 Score = 105 bits (116), Expect = 1e-17 Identities = 213/310 (69%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 182974 TATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCA 183033 ||||| |||||| | ||| || | || | ||| | |||||||| |||| |||||| || Sbjct 24218 TATATATATTCTTTGAAAGAATTAAAAGAAGCAAAGACACATGATGCTCTCTGGAATACA 24159 Query 183034 TCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCT 183093 | ||| |||| | | | |||| |||||| | | || ||||| |||||||||| Sbjct 24158 GCTCAATTACAACTCGTTAATGAAGCTAAAATGAACGGGTTCTTACGCATGTACTGGGTA 24099 Query 183094 AAAAAGATACTTGAATGGACAAGAACTCCGGA-AGAT-GCTTTGAGTTATAGTATCTATA 183151 || || || | || ||| || || | | ||| ||| | | ||| || ||| Sbjct 24098 AAGAAAATCTTAGAGTGGC--AGCTGTCTGCAGAGACAGCTCTAAAGTATTCAATTTATT 24041 Query 183152 TGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGT 183211 | || |||| | | | ||||||| || || ||||| ||||| || || ||| | ||| Sbjct 24040 TTAATGATAAATTCTCATTAGACGGAACAGACCCTAATGGATATGTCGGCTGTCTCTGGG 23981 Query 183212 CTATTTGCGGAT-TACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGA 183270 | || || | | | || |||| || ||||| || ||| ||||| || ||||||||| Sbjct 23980 GT-TTAGCTGGTCTTCATGATACGGCTTGGAAGGAGAGAGAAATATTCGGCAAGATAAGA 23922 Query 183271 TATATGAATT 183280 |||||||||| Sbjct 23921 TATATGAATT 23912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903372635634400