Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq443 107 2e-18 seq669 102 8e-17 seq144 93.3 4e-14 seq743 86.0 6e-12 >seq443 Length=45324 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||||||||| || || ||||| || ||| | || || ||| Sbjct 278 AAGTGAAGGGTTGACTCTTTCTGAATGTTATAATCAGACAGCGTCCTCCCATCTTCCAGC 219 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || |||| || |||||||| || ||||| || || |||||||| ||| Sbjct 218 TGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGAATC 159 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | ||| | ||||| | ||||| || || | |||| || ||||| Sbjct 158 TTTGCCTTCACGTTCTCGATAGTGTCTGATGGCTCAACATCAAGAGTGATCGTCTTGCCA 99 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 |||||||| || || || || |||||| Sbjct 98 GTCAGAGTCTTCACAAAGATTTGCATG 72 >seq669 Length=99412 Score = 102 bits (112), Expect = 8e-17 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414 || || || || ||||| ||||| |||||||||||||| | || ||||| | | ||| Sbjct 67744 TAATCTCCTACACGTTTTTCAAAGAAGTTTGTTTTGCCTTGCAAAGAAATCATATCCATG 67803 Query 120415 AACTCGAACGGGTTGCTCGCGTTAAAGTAT-TTCGGCTGGCCCAACTGTACGAGCAGTCG 120473 || || |||||||| ||||| ||||| ||| ||| || ||||| | ||||| || Sbjct 67804 AAGTCAAACGGGTTCCTCGCATTAAA-TATCTTCTGCCCCCCCAAGCATGTTAGCAGACG 67862 Query 120474 GTCCGCTACAAACTCAATGTACT 120496 |||||||||||||||||||||| Sbjct 67863 ATCCGCTACAAACTCAATGTACT 67885 >seq144 Length=153386 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || |||||||| || || | || || ||||||||||| ||||| || || ||||| Sbjct 49707 GTCATCAAGCTGCTTCCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTT 49766 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||||| ||| | | || | ||||| | |||||||| || | ||| | Sbjct 49767 GTCCTGGATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAAT 49826 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || || || || || ||||| ||||| Sbjct 49827 GGTTTTACCCGTTAGCGTCTTCACAAAAATTTGCAT 49862 >seq743 Length=20979 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || |||| || |||||||| || ||||| || || |||||| Sbjct 3 TCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCTTG 62 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | ||| | ||||| | ||||| || || | |||| | Sbjct 63 TCTTGAATCTTTGCCTTTACGTTCTCGATAGTGTCTGATGGCTCAACATCTAGAGTGATG 122 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || || || |||||||| Sbjct 123 GTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483400163974600