Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq1481 104 2e-17 seq402 102 8e-17 seq924 100 3e-16 seq217 98.7 9e-16 >seq1481 Length=6301 Score = 104 bits (114), Expect = 2e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| || ||||||||||| |||||||||| ||| Sbjct 4893 GCGGGCATGGTCTAGTGGCTATGACGTCTGCTTCACACGCAGAAGATCCCGGGTTCGATC 4834 Query 39838 CCCGGTGCCCGTATT 39852 ||||||||||||||| Sbjct 4833 CCCGGTGCCCGTATT 4819 Score = 100 bits (110), Expect = 3e-16 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 39784 ATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATCCCCGGT 39843 |||||||||||| |||| |||||| |||||||||||||| |||||||||| ||||||||| Sbjct 6301 ATGGTCTAGTGGCTATGACGTCTGCTTTACACGCAGAAGATCCCGGGTTCGATCCCCGGT 6242 Query 39844 GCCCGTAT 39851 |||||||| Sbjct 6241 GCCCGTAT 6234 Score = 98.7 bits (108), Expect = 9e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 254 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 195 Query 39838 CCCGGTGCCCGTAT 39851 |||||||||||||| Sbjct 194 CCCGGTGCCCGTAT 181 Score = 96.9 bits (106), Expect = 3e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 2624 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 2565 Query 39838 CCCGGTGCCCGTA 39850 ||||||||||||| Sbjct 2564 CCCGGTGCCCGTA 2552 Score = 96.9 bits (106), Expect = 3e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| ||||||||| || |||| |||||| || ||||||||||| |||||||||| ||| Sbjct 3654 GCGGGCATGGTCTAGCGGCTATGACGTCTGCTTCACACGCAGAAGATCCCGGGTTCGATC 3595 Query 39838 CCCGGTGCCCGTA 39850 ||||||||||||| Sbjct 3594 CCCGGTGCCCGTA 3582 >seq402 Length=46832 Score = 102 bits (112), Expect = 8e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 39775 CAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCA 39834 || ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| Sbjct 5947 CAAGCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCG 5888 Query 39835 ATCCCCGGTGCCCGTATTTCT 39855 |||||||||||||||| |||| Sbjct 5887 ATCCCCGGTGCCCGTACTTCT 5867 Score = 96.9 bits (106), Expect = 3e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 13667 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 13726 Query 39838 CCCGGTGCCCGTATTT 39853 ||||||||||||| || Sbjct 13727 CCCGGTGCCCGTACTT 13742 >seq924 Length=12463 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 945 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 1004 Query 39838 CCCGGTGCCCGTATT 39852 ||||||||||||||| Sbjct 1005 CCCGGTGCCCGTATT 1019 Score = 98.7 bits (108), Expect = 9e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 8 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 67 Query 39838 CCCGGTGCCCGTAT 39851 |||||||||||||| Sbjct 68 CCCGGTGCCCGTAT 81 >seq217 Length=57357 Score = 98.7 bits (108), Expect = 9e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 1184 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 1125 Query 39838 CCCGGTGCCCGTAT 39851 |||||||||||||| Sbjct 1124 CCCGGTGCCCGTAT 1111 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 387 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 328 Query 39838 CCCGGTGCCCGTATT 39852 |||||| |||||||| Sbjct 327 CCCGGTACCCGTATT 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466104902297600