Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq144 104 2e-17 seq443 93.3 4e-14 seq743 84.2 2e-11 >seq144 Length=153386 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||| |||||| ||||||||||||||| | || ||| || Sbjct 49654 ACCAGGTGGAGTGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCGTCATCA 49713 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| || | |||||||| || || || || || || || || || Sbjct 49714 AGCTGCTTCCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGG 49773 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || ||| || || || | ||||| || | ||||| || || |||||||||||| Sbjct 49774 ATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATGGTTTTA 49833 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || |||| || || || ||||||||||| || Sbjct 49834 CCCGTTAGCGTCTTCACAAAAATTTGCATCTT 49865 >seq443 Length=45324 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| | |||| ||| | ||| || || || || || |||||||| || || | | Sbjct 299 CCACCTCTCAAGCGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATGTTATAATCAGAC 240 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | | || || ||||| ||||| |||||||| | |||||||||||| || || Sbjct 239 AGCGTCCTCCCA-TCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGG 181 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || ||||| ||| || || || | ||||| || | || || Sbjct 180 AATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATAGTGTCTGATGGCTCAAC 121 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || || || | ||| || || || |||||||| Sbjct 120 ATCAAGAGTGATCGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 73 >seq743 Length=20979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| ||||| |||||||| | |||||||||||| || || || || || || Sbjct 3 TCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCTTG 62 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 |||||||| ||| || || || | ||||| || | || || || ||||| ||| Sbjct 63 TCTTGAATCTTTGCCTTTACGTTCTCGATAGTGTCTGATGGCTCAACATCTAGAGTGATG 122 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || | || || || || || |||||| Sbjct 123 GTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCATT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505376825805800