Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq200 136 5e-27 >seq200 Length=58787 Score = 136 bits (150), Expect = 5e-27 Identities = 303/452 (67%), Gaps = 12/452 (3%) Strand=Plus/Minus Query 68994 ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGC 69053 |||||| || ||||| || | || || ||||| || || ||||| | |||| || Sbjct 57096 ACTTGCTTCGCATGCAGCGAAGTATATACACTCGAAGATATTTTTATTAATATCTCTAGC 57037 Query 69054 TTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCC 69113 | || ||| || || | ||| ||| | |||||||||||| | |||||| || || Sbjct 57036 AGCAGGAGAATCAAAAGGCAGACGTAGAAGTAGAAATGCATCTGCAAGTCCCTGTACACC 56977 Query 69114 AATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATT 69173 | ||||||||| |||||||| ||| | | ||||| || |||||||| ||||| Sbjct 56976 TAAACCGATAGGCCTATGTCTGAGATTGCTTCGTCTTGCTTCGGGTATAGGATAGTAATT 56917 Query 69174 AATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAG 69233 |||| ||||| ||||||||||||| | || |||| || || ||||| || Sbjct 56916 TCTATCGATAATATTATTAAGATTTCTAGTCATAACCTTAATAACATCTTTTAGCTTATC 56857 Query 69234 AAAATCAAA--TCGTC-------CATCTATAACAAACATATTCAGTGCTACAGATGCTAG 69284 | | ||||| || || |||||| | |||| | || | |||||| || || Sbjct 56856 ATAGTCAAATGTCTTCTTCTCTGCATCTACA--AAACGT-GGGAGAGATACAGACGCAAG 56800 Query 69285 ATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACT 69344 ||| || || ||||| || | || ||| |||||| | | || || ||||| || Sbjct 56799 ATTGCATACAGCTACTTCTTCAGGGCTTGTATATTGAACAACTTCACAGCAAAGATTGCT 56740 Query 69345 ACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAG 69404 || | ||| || |||| || ||||| |||||| | || || || || || || | Sbjct 56739 TGATCGTAGAGTTCCTAGATGCTGATGATTGCTCTTTCTATTGCATGCATCTTTATACAA 56680 Query 69405 AATAAACGGAGTACCAGTTTCAATCTGAGATT 69436 ||| |||| || || || || ||||||| || Sbjct 56679 CATATACGGTGTCCCGGTCTCTATCTGAGCTT 56648 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 69790 CTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTT 69849 || ||||| || |||| ||||||||| | || ||||| || ||||||||||||| || Sbjct 55436 CTAAGCATAGGGATAAGACCATTAGAATATCCGTTTGTACCTCGAATATAACTTCCTGTT 55377 Query 69850 GCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAA 69909 || | ||||| | | ||| || |||| |||||||| | || || |||| ||||| Sbjct 55376 GCTCTAATATCTGTTACAGACAGCCCTAAGCCTCCTGCAGTCTTTGATATTAATGCACAT 55317 Query 69910 CGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967 | ||||| | ||||||| || || ||| ||| |||| | || ||||||| Sbjct 55316 TGCCGTAATGTACTAAATATACCGTCGATTGAATCTTCTTTCATCGTCAGCAGAAAAC 55259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686879477580600