Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq771 118 1e-21 seq669 86.0 7e-12 >seq771 Length=90291 Score = 118 bits (130), Expect = 1e-21 Identities = 204/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| |||| | || ||||| || || ||| || ||| | ||||||||| Sbjct 37779 GTAAAGATGTAACGGGGGGCGGAGGCATCTTTTCCTCCTTCCTTCCGAGAGCCAAACTGT 37720 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||||| |||| ||| ||||||||| ||| ||||| |||||||| | | | Sbjct 37719 CCTACGGGCTCAAGGAAGTTAAGGTTGTTGCTGCCTACGAACCGCTGAGCCATGGTGATA 37660 Query 152149 ATCGTGCCCTGC--AGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 || || |||| ||||| || || |||||||| || || |||||||||| | ||| | Sbjct 37659 ATGGTTTGCTGCAAAGACT-GC-TCGCCGTGGTGGTAGGCACTCTGCTCCGCTACGTAGC 37602 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTG-AGACAGGCGTAAATC 152265 ||| | ||| || || ||||| || | | || ||| || ||| |||| || | | | Sbjct 37601 CCGAAAGCTGTGCAACTTTCATCTCGGCCTTCGTGTTTTTTTTGAAGAC-TGCAAACAGC 37543 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315 || ||||| || |||| | ||||| || | || ||||| ||||| Sbjct 37542 ACTTTGCGTTGCCCGACTTTCCATCCGTCTACAAGTTGTGGAATAGAACG 37493 >seq669 Length=99412 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/154 (73%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 |||||| || || || |||||||| ||||| || || |||| ||| || || | ||||| Sbjct 67743 ATAATCTCCTACACGTTTTTCAAAGAAGTTTGTTTTGCCTTGCAAAGAAATCATATCCAT 67802 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCT---CCCCAAACTGTGCCATGAG 74578 |||| || |||||| | ||| |||||| ||||| |||| || || | || Sbjct 67803 GAAGTCAAACGGGTTCCTCGCAT--TAAATAT-CTTCTGCCCCCCCAAGCATGTTAGCAG 67859 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATT 74612 |||||||| ||||| | ||||||||||| |||| Sbjct 67860 ACGATCCGCTACAAACTCAATGTACTGCGACATT 67893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547192640717000