Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq443 159 4e-34 seq144 145 9e-30 seq743 136 5e-27 seq771 107 2e-18 >seq443 Length=45324 Score = 159 bits (176), Expect = 4e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || || |||||||| || |||||||| |||||| || Sbjct 73 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACGATCACTCTTGATGTTGAGCCATCA 132 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || |||||||||||||||||||||||||| || ||| Sbjct 133 GACACTATCGAGAACGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCAG 192 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || ||||| || || |||| | || || | || ||||| Sbjct 193 CAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGGAGGACGCTGTCTGATTATAAC 252 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || || || || || ||||| Sbjct 253 ATTCAGAAAGAGTCAACCCTTCA 275 >seq144 Length=153386 Score = 145 bits (160), Expect = 9e-30 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 27395 ATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGG 27454 || |||| | |||||||| ||||| |||||||| || || || || ||||| ||||| | Sbjct 49873 ATTTTACGAAGATGCAAATTTTTGTGAAGACGCTAACGGGTAAAACCATTACCCTTGATG 49814 Query 27455 TTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTC 27514 | ||| | ||| | || | |||| ||||||| || || |||||||||||||| |||| Sbjct 49813 TGGAGCCTTCTGACACTATCGAAAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTC 49754 Query 27515 CTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAG 27574 |||| ||||||||||| || || |||||||| ||||| || || || | | || || Sbjct 49753 CTCCTGACCAGCAGCGCCTTATCTTTGCTGGGAAGCAGCTTGATGACGGCAGAACTCTCT 49694 Query 27575 CAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | ||||| || | || |||||| ||| || || || || Sbjct 49693 CCGACTACAACATTCAGAAGGAAAGCACACTCCACCTGGT 49654 >seq743 Length=20979 Score = 136 bits (150), Expect = 5e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || ||||| || ||||| || |||||| || Sbjct 158 AATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACCATCACTCTAGATGTTGAGCCATC 99 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || | ||||| || ||||| |||||||||||||||||||| || || Sbjct 98 AGACACTATCGAGAACGTAAAGGCAAAGATTCAAGACAAGGAGGGAATTCCTCCTGATCA 39 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||||||||| |||||||| || ||||| || || |||| Sbjct 38 GCAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAAGATG 1 >seq771 Length=90291 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 32047 GACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGC 32106 || ||||| || || ||||| ||||||||||| || ||||| | ||||| ||||||||| Sbjct 37577 GAGATGAAAGTTGCACAGCTTTCGGGCTACGTAGCGGAGCAGAGTGCCTACCACCACGGC 37636 Query 32107 GAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAAC 32166 ||| ||| | ||| |||||| ||| | | |||||| || || || || ||| Sbjct 37637 GAGCAGTCTTTGCAGCAAACCATTATCACCATGGCTCAGCGGTTCGTAGGCAGCAACAAC 37696 Query 32167 CTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCT 32226 || ||||| || ||||| ||||||||||| | ||| | || || || ||||| Sbjct 37697 CTTAACTTCCTTGAGCCCGTAGGACAGTTTGGCTCTCGGAAGGAAGGAGGAAAAGATGCC 37756 Query 32227 GCGAGCTCCCGTTACATCTTCACC 32250 | | ||||||||||||| ||| Sbjct 37757 TCCGCCCCCCGTTACATCTTTACC 37780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570286054874800