Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq443 197 3e-45 seq743 150 4e-31 seq144 149 1e-30 >seq443 Length=45324 Score = 197 bits (218), Expect = 3e-45 Identities = 171/212 (81%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || |||||||| || ||||||||||| | || ||||| |||||| Sbjct 284 AGCACCAAGTGAAGGGTTGACTCTTTCTGAATGTTATAATCAGACAGCGTCCTCCCATCT 225 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || || ||||| || || || |||||||||| ||| ||||||||| Sbjct 224 TCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCC 165 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| |||||||| ||||| ||||| || ||||| || |||||||||||| Sbjct 164 TGAATCTTTGCCTTCACGTTCTCGATAGTGTCTGATGGCTCAACATCAAGAGTGATCGTC 105 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| ||||| | ||||| Sbjct 104 TTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 73 >seq743 Length=20979 Score = 150 bits (166), Expect = 4e-31 Identities = 128/158 (81%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210958 CATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCT 211017 ||||||||||||||||||| || || ||||| || || || |||||||||| ||| |||| Sbjct 1 CATCTTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGATCAGGAGGAATTCCCTCCT 60 Query 211018 TGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGA 211077 |||| || |||||| || ||||| ||||| ||||| || ||||| || ||||||| Sbjct 61 TGTCTTGAATCTTTGCCTTTACGTTCTCGATAGTGTCTGATGGCTCAACATCTAGAGTGA 120 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | ||||| |||||||| ||||| ||||| | ||||||| Sbjct 121 TGGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCATT 158 >seq144 Length=153386 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||| || ||| || || || ||||| || || | || || || || || || Sbjct 49654 ACCAGGTGGAGTGTGCTTTCCTTCTGAATGTTGTAGTCGGAGAGAGTTCTGCCGTCATCA 49713 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||| || || ||||||||||| || ||||||||||||| || |||||||||||| Sbjct 49714 AGCTGCTTCCCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGG 49773 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 |||||| ||||| |||||||| |||||||| || || || || || || || || Sbjct 49774 ATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCCACATCAAGGGTAATGGTTTTA 49833 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| ||||| | ||||| || Sbjct 49834 CCCGTTAGCGTCTTCACAAAAATTTGCATCTT 49865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159101281666475