Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq743 102 6e-17 seq443 89.7 3e-13 >seq743 Length=20979 Score = 102 bits (112), Expect = 6e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||||||||| || || |||||||| || ||||| | | Sbjct 158 AATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACCATCACTCTAGATGTTGAGCCATC 99 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | |||| ||| ||| ||||| || || | || || ||||| Sbjct 98 AGACACTATCGAGAACGTAAAGGCAAAGATTCAAGACAAGGAGGGAATTCCTCCTGATCA 39 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 |||||| | || ||||||||||| || |||||||| Sbjct 38 GCAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAAGA 3 >seq443 Length=45324 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || || || || ||||||||||| || ||||| | | Sbjct 73 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACGATCACTCTTGATGTTGAGCCATCA 132 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || ||| ||| ||||| || || | || || ||||| Sbjct 133 GACACTATCGAGAACGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCAG 192 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || |||||||| | | || | ||||| ||| Sbjct 193 CAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGGAGGACGCTGTCTGATTATAAC 252 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 253 ATTCAGAAAGAGTCAAC 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337995531934820